Difference between revisions of "GHMT2r"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RIBFLVt2_CUT RIBFLVt2_CUT] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * Wi...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GHMT2r GHMT2r] == * direction: ** REVERSIBLE * common name: ** Glycine hydroxymethyltransferase, re...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/RIBFLVt2_CUT RIBFLVt2_CUT] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GHMT2r GHMT2r] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 +
* common name:
 +
** Glycine hydroxymethyltransferase, reversible
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[ribflv]][e] '''+''' 1.0 [[h]][e] '''<=>''' 1.0 [[ribflv]][c] '''+''' 1.0 [[h]][c]
+
** 1.0 [[thf]][c] '''+''' 1.0 [[ser__L]][c] '''<=>''' 1.0 [[h2o]][c] '''+''' 1.0 [[gly]][c] '''+''' 1.0 [[mlthf]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Riboflavin C17H20N4O6[e] '''+''' 1.0 H+[e] '''<=>''' 1.0 Riboflavin C17H20N4O6[c] '''+''' 1.0 H+[c]
+
** 1.0 5,6,7,8-Tetrahydrofolate[c] '''+''' 1.0 L-Serine[c] '''<=>''' 1.0 H2O H2O[c] '''+''' 1.0 Glycine[c] '''+''' 1.0 5,10-Methylenetetrahydrofolate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[B471_RS0101930]]
 +
** Source: [[orthology-cljungdahlii]]
 +
** Source: [[orthology-bsubtilis]]
 +
** Source: [[orthology-aferrooxidans]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''471''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00630]]: [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630]
 +
** '''23''' reactions found over '''129''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''212''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''101''' reactions found over '''715''' reactions in the full pathway
 +
* [[map00460]]: [http://www.genome.jp/dbget-bin/www_bget?map00460 map00460]
 +
** '''1''' reactions found over '''14''' reactions in the full pathway
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''51''' reactions found over '''220''' reactions in the full pathway
 +
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 +
** '''78''' reactions found over '''228''' reactions in the full pathway
 +
* [[map00680]]: [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680]
 +
** '''14''' reactions found over '''75''' reactions in the full pathway
 +
* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
 +
** '''24''' reactions found over '''133''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''148''' reactions found over '''694''' reactions in the full pathway
 +
* [[map00670]]: [http://www.genome.jp/dbget-bin/www_bget?map00670 map00670]
 +
** '''13''' reactions found over '''65''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[orthology]]
−
** [[reaction found from orthology but we fixed reversibility based on biological expertise]]
+
** Source: [[orthology-cljungdahlii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-aferrooxidans]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15481 15481]
 +
* MetaNetX (MNX) Equation : MNXR100142
 +
* KEGG Reaction : R00945
 +
* EC Number : 2.1.2.1
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: in pathway=}}
+
{{#set: common name=Glycine hydroxymethyltransferase, reversible}}
−
{{#set: reconstruction category=manual}}
+
{{#set: gene associated=B471_RS0101930}}
−
{{#set: reconstruction source=reaction found from orthology but we fixed reversibility based on biological expertise}}
+
{{#set: in pathway=map01100|map00630|map01110|map01120|map00460|map01200|map01230|map00680|map00260|map01130|map00670}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis|orthology-aferrooxidans}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:47, 21 March 2018

Reaction GHMT2r

  • direction:
    • REVERSIBLE
  • common name:
    • Glycine hydroxymethyltransferase, reversible
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 5,6,7,8-Tetrahydrofolate[c] + 1.0 L-Serine[c] <=> 1.0 H2O H2O[c] + 1.0 Glycine[c] + 1.0 5,10-Methylenetetrahydrofolate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • MetaNetX (MNX) Equation : MNXR100142
  • KEGG Reaction : R00945
  • EC Number : 2.1.2.1




Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=GHMT2r&oldid=8331"