Difference between revisions of "DHPTDCs2"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MDDCP4ex MDDCP4ex] == * direction: ** LEFT-TO-RIGHT * common name: ** Murein D,D-carboxypeptidase (...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DHPTDCs2 DHPTDCs2] == * direction: ** LEFT-TO-RIGHT * common name: ** 4,5-dihydroxy-2,3-pentanedion...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/MDDCP4ex MDDCP4ex] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/DHPTDCs2 DHPTDCs2] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Murein D,D-carboxypeptidase (murein5p4p) (periplasm)
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** 4,5-dihydroxy-2,3-pentanedione cyclization (spontaneous)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[murein5p4p]][e] '''+''' 1.0 [[h2o]][e] '''=>''' 1.0 [[murein4p4p]][e] '''+''' 1.0 [[ala__D]][e]
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** 1.0 [[dhptd]][c] '''=>''' 1.0 [[mdhdhf]][c]
 
* With common name(s):
 
* With common name(s):
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** 1.0 Two linked disacharide pentapeptide and tetrapeptide murein units (uncrosslinked, middle of chain)[e] '''+''' 1.0 H2O H2O[e] '''=>''' 1.0 Two linked disacharide tetrapeptide murein units (uncrosslinked, middle of chain)[e] '''+''' 1.0 D-Alanine[e]
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** 1.0 4,5-dihydroxy-2,3-pentanedione[c] '''=>''' 1.0 (2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[B471_RS0101180]]
 
−
** [[pantograph]]-[[cljungdahlii]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00550]]: [http://www.genome.jp/dbget-bin/www_bget?map00550 map00550]
 
−
** '''14''' reactions found over '''27''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
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* Category: [[manual]]
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** [[pantograph]]:
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** Source: [[manual-reaction_to_add_delete]]
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*** [[cljungdahlii]]
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*** Comment: [[reaction added from literature evidence or biological expertise]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR101432
+
* RHEA:
−
* EC Number : 3.4.16.4
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=35155 35155]
 +
* MetaNetX (MNX) Equation : MNXR97442
 +
* BioCyc : META:RXN-10015
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Murein D,D-carboxypeptidase (murein5p4p) (periplasm)}}
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{{#set: common name=4,5-dihydroxy-2,3-pentanedione cyclization (spontaneous)}}
−
{{#set: gene associated=B471_RS0101180}}
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{{#set: in pathway=}}
−
{{#set: in pathway=map00550}}
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{{#set: reconstruction category=manual}}
−
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=manual-reaction_to_add_delete}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction comment=reaction added from literature evidence or biological expertise}}
−
{{#set: reconstruction source=cljungdahlii}}
+

Latest revision as of 15:47, 21 March 2018

Reaction DHPTDCs2

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 4,5-dihydroxy-2,3-pentanedione cyclization (spontaneous)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 4,5-dihydroxy-2,3-pentanedione[c] => 1.0 (2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • RHEA:
  • MetaNetX (MNX) Equation : MNXR97442
  • BioCyc : META:RXN-10015




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