Difference between revisions of "UGMDDS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/UGMDDS UGMDDS] == * direction: ** LEFT-TO-RIGHT * common name: ** UDP-N-acetylmuramoyl-L-alanyl-D-g...")
 
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{{#ask: [[Category:Reaction]] [[reconstruction source::reaction found from orthology but we fixed reversibility based on biological expertise]]
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[[Category:Reaction]]
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| ?COMMON NAME
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== Reaction [http://bigg.ucsd.edu/universal/reactions/UGMDDS UGMDDS] ==
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| ?ec number
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* direction:
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| ?reconstruction category
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** LEFT-TO-RIGHT
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| ?reconstruction tool
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* common name:
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| ?reconstruction source
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** UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine synthetase
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| ?gene associated
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* Synonym(s):
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| ?in pathway
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}}
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== Reaction Formula ==
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* With identifiers:
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** 1.0 [[alaala]][c] '''+''' 1.0 [[ugmd]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[ugmda]][c] '''+''' 1.0 [[adp]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[pi]][c]
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* With common name(s):
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** 1.0 D-Alanyl-D-alanine[c] '''+''' 1.0 UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine[c] '''+''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 H+[c] '''+''' 1.0 Phosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[B471_RS21735]]
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** Source: [[orthology-cljungdahlii]]
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** Source: [[orthology-bsubtilis]]
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** Source: [[orthology-aferrooxidans]]
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== Pathways  ==
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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** '''471''' reactions found over '''2349''' reactions in the full pathway
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* [[map00550]]: [http://www.genome.jp/dbget-bin/www_bget?map00550 map00550]
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** '''14''' reactions found over '''27''' reactions in the full pathway
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* [[map00300]]: [http://www.genome.jp/dbget-bin/www_bget?map00300 map00300]
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** '''10''' reactions found over '''34''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-cljungdahlii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-bsubtilis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-aferrooxidans]]
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*** Tool: [[pantograph]]
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== External links  ==
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* MetaNetX (MNX) Equation : MNXR105094
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* EC Number : 6.3.2.10
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine synthetase}}
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{{#set: gene associated=B471_RS21735}}
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{{#set: in pathway=map01100|map00550|map00300}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis|orthology-aferrooxidans}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:48, 21 March 2018

Reaction UGMDDS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine synthetase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 D-Alanyl-D-alanine[c] + 1.0 UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate[c] + 1.0 ATP C10H12N5O13P3[c] => 1.0 UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine[c] + 1.0 ADP C10H12N5O10P2[c] + 1.0 H+[c] + 1.0 Phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR105094
  • EC Number : 6.3.2.10




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