|
|
(2 intermediate revisions by the same user not shown) |
Line 1: |
Line 1: |
− | [[Category:Pathway]] | + | [[Category:Gene]] |
− | == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00720 map00720] == | + | == Gene B471_RS0110685 == |
− | * common_name:
| + | |
− | ** Carbon fixation pathways in prokaryotes
| + | |
| * Synonym(s): | | * Synonym(s): |
| | | |
− | == Reaction(s) found == | + | == Reactions associated == |
− | '''25''' reactions found over '''157''' reactions in the full pathway
| + | * Reaction: [[23CN2P1]] |
− | * [[ACACT1r]] | + | ** Source: [[orthology-bsubtilis]] |
− | * [[ACACT2r]] | + | * Reaction: [[23CN2P2]] |
− | * [[ACACT3r]] | + | ** Source: [[orthology-bsubtilis]] |
− | * [[ACACT4r]] | + | * Reaction: [[23CN2P3]] |
− | * [[ACACT7r]] | + | ** Source: [[orthology-bsubtilis]] |
− | * [[ACCOAC]] | + | * Reaction: [[23CN2P4]] |
− | * [[ACONT]] | + | ** Source: [[orthology-bsubtilis]] |
− | * [[ACONTa]] | + | * Reaction: [[3NUCLE1]] |
− | * [[ACONTb]] | + | ** Source: [[orthology-bsubtilis]] |
− | * [[ACS]] | + | * Reaction: [[3NUCLE2]] |
− | * [[ECOAH1]] | + | ** Source: [[orthology-bsubtilis]] |
− | * [[ECOAH9ir]] | + | * Reaction: [[3NUCLE3]] |
− | * [[FTHFLi]] | + | ** Source: [[orthology-bsubtilis]] |
− | * [[FUM]] | + | * Reaction: [[3NUCLE4]] |
− | * [[HACD1]] | + | ** Source: [[orthology-bsubtilis]] |
− | * [[ICDHyr]] | + | * Reaction: [[NTD1]] |
− | * [[MACCOAT]]
| + | ** Source: [[orthology-bsubtilis]] |
− | * [[MDH]]
| + | * Reaction: [[NTD10]] |
− | * [[MTHFC]]
| + | ** Source: [[orthology-bsubtilis]] |
− | * [[MTHFD]]
| + | * Reaction: [[NTD2]] |
− | * [[MTHFR3]]
| + | ** Source: [[orthology-bsubtilis]] |
− | * [[PC]]
| + | * Reaction: [[NTD3]] |
− | * [[PPCOAC]]
| + | ** Source: [[orthology-bsubtilis]] |
− | * [[PPDK]]
| + | * Reaction: [[NTD4]] |
− | * [[SUCOAS]]
| + | ** Source: [[orthology-bsubtilis]] |
− | == Reaction(s) not found ==
| + | * Reaction: [[NTD5]] |
− | * [http://bigg.ucsd.edu/universal/reactions/3HOPCD 3HOPCD]
| + | ** Source: [[orthology-bsubtilis]] |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
| + | * Reaction: [[NTD6]] |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
| + | ** Source: [[orthology-bsubtilis]] |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
| + | * Reaction: [[NTD7]] |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2] | + | ** Source: [[orthology-bsubtilis]] |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m] | + | * Reaction: [[NTD8]] |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
| + | ** Source: [[orthology-bsubtilis]] |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
| + | * Reaction: [[NTD9]] |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
| + | ** Source: [[orthology-bsubtilis]] |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p] | + | == Pathways associated == |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
| + | * [[map00240]] |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
| + | * [[map01100]] |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
| + | * [[map01110]] |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m] | + | * [[map00230]] |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p] | + | * [[map00760]] |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACCOAC_1 ACCOAC_1] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACCOACrm ACCOACrm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACCOAhi ACCOAhi]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACITL ACITL]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACKr ACKr] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACKrh ACKrh] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACKrm ACKrm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACONTm ACONTm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACONTx ACONTx]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACSm ACSm] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACSp ACSp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLm C2M26DCOAHLm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLx C2M26DCOAHLx]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CITMCOALm CITMCOALm] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DHACOAH DHACOAH] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECH_3hivcoa ECH_3hivcoa]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH11p ECOAH11p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH12 ECOAH12]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH12m ECOAH12m] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH1_1 ECOAH1_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH1m ECOAH1m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH1x ECOAH1x]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH9m ECOAH9m] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FRD FRD] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FRDcm FRDcm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FRDm FRDm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FTHFLmi FTHFLmi]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FUMm FUMm] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GHBDHy GHBDHy]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD10p HACD10p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD1_1 HACD1_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD1i HACD1i] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD1m HACD1m] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD1x HACD1x]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD2 HACD2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD2_1 HACD2_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD2i HACD2i] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD2m HACD2m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD3 HACD3]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD3_1 HACD3_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD3i HACD3i] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD3m HACD3m] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD4 HACD4]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD4i HACD4i]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD4m HACD4m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD4p HACD4p] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD5 HACD5]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD5i HACD5i]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD5m HACD5m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD5p HACD5p] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD6 HACD6] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD6i HACD6i]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD6m HACD6m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD6p HACD6p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD7 HACD7] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD7i HACD7i]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD7m HACD7m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD7p HACD7p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD9 HACD9] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD9m HACD9m] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACDp HACDp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HADPCOADH3 HADPCOADH3]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp HBCO_nadp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp_m HBCO_nadp_m] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HIBDkt HIBDkt]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HMNO HMNO]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ICDHhr ICDHhr]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ICDHym ICDHym] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ICDHyp ICDHyp] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ITCOALm ITCOALm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHf MDHf]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHh MDHh] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHi2 MDHi2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHm MDHm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHp MDHp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MME MME] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MMEm MMEm] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MMM2 MMM2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MMMm MMMm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MSAR MSAR]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MTHFC_1 MTHFC_1] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MTHFCm MTHFCm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MTHFCm_1 MTHFCm_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MTHFCx MTHFCx]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MTHFD_1 MTHFD_1] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MTHFDm MTHFDm] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MTHFDm_1 MTHFDm_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MTHFO MTHFO]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MTHFO_nadp MTHFO_nadp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MTHFR2 MTHFR2] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MTHFR2_1 MTHFR2_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MTHFR3_1 MTHFR3_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PCPPTh PCPPTh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PCPPTm PCPPTm] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PCm PCm] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PPC PPC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PPCOACm PPCOACm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PPDKh PPDKh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PPS PPS]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PTA2 PTA2] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PTAr PTAr]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PTArh PTArh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PTArm PTArm] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SSCOARy SSCOARy]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SUCD1 SUCD1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SUCD1m SUCD1m] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SUCD2_u6m SUCD2_u6m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SUCD3_u6m SUCD3_u6m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SUCDHh SUCDHh] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SUCLm SUCLm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SUCOASm SUCOASm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLm T2M26DCOAHLm] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLx T2M26DCOAHLx]
| + | |
| == External links == | | == External links == |
− | {{#set: common_name=Carbon fixation pathways in prokaryotes}}
| + | {{#set: reaction associated=23CN2P1|23CN2P2|23CN2P3|23CN2P4|3NUCLE1|3NUCLE2|3NUCLE3|3NUCLE4|NTD1|NTD10|NTD2|NTD3|NTD4|NTD5|NTD6|NTD7|NTD8|NTD9}} |
− | {{#set: reaction found=25}}
| + | {{#set: pathway associated=map00240|map01100|map01110|map00230|map00760}} |
− | {{#set: reaction not found=157}} | + | |
− | {{#set: completion rate=16.0}} | + | |