Difference between revisions of "Map00071"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NTD10 NTD10] == * direction: ** LEFT-TO-RIGHT * common name: ** 5'-nucleotidase (XMP) * Synonym(s):...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00071 map00071] == * common_name: ** Fatty acid degradation * Synonym(s): == Reaction(s) found ==...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/NTD10 NTD10] ==
+
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00071 map00071] ==
−
* direction:
+
* common_name:
−
** LEFT-TO-RIGHT
+
** Fatty acid degradation
−
* common name:
+
−
** 5'-nucleotidase (XMP)
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''17''' reactions found over '''167''' reactions in the full pathway
−
** 1.0 [[xmp]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[pi]][c] '''+''' 1.0 [[xtsn]][c]
+
* [[ABUTD]]
−
* With common name(s):
+
** 2 associated gene(s):
−
** 1.0 Xanthosine 5'-phosphate[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Phosphate[c] '''+''' 1.0 Xanthosine[c]
+
*** [[B471_RS0119455]]
−
 
+
*** [[B471_RS0115620]]
−
== Genes associated with this reaction  ==
+
** 1 reconstruction source(s) associated:
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[orthology-bsubtilis]]
−
* [[B471_RS0110685]]
+
* [[ACACT1r]]
−
** [[pantograph]]-[[bsubtilis]]
+
** 1 associated gene(s):
−
== Pathways  ==
+
*** [[B471_RS0105350]]
−
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
+
** 1 reconstruction source(s) associated:
−
** '''68''' reactions found over '''244''' reactions in the full pathway
+
*** [[orthology-bsubtilis]]
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
* [[ACACT2r]]
−
** '''471''' reactions found over '''2349''' reactions in the full pathway
+
** 2 associated gene(s):
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
*** [[B471_RS0110565]]
−
** '''212''' reactions found over '''1054''' reactions in the full pathway
+
*** [[B471_RS0115615]]
−
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
+
** 1 reconstruction source(s) associated:
−
** '''64''' reactions found over '''298''' reactions in the full pathway
+
*** [[orthology-bsubtilis]]
−
* [[map00760]]: [http://www.genome.jp/dbget-bin/www_bget?map00760 map00760]
+
* [[ACACT3r]]
−
** '''17''' reactions found over '''97''' reactions in the full pathway
+
** 2 associated gene(s):
−
== Reconstruction information  ==
+
*** [[B471_RS0110565]]
−
* Category: [[orthology]]
+
*** [[B471_RS0115615]]
−
** Source: [[orthology-bsubtilis]]
+
** 1 reconstruction source(s) associated:
−
*** Tool: [[pantograph]]
+
*** [[orthology-bsubtilis]]
 +
* [[ACACT4r]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0110565]]
 +
*** [[B471_RS0115615]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ACACT7r]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0115615]]
 +
*** [[B471_RS0110565]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ECOAH1]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[ECOAH2]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0110785]]
 +
*** [[B471_RS0115580]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ECOAH3]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0110785]]
 +
*** [[B471_RS0115580]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ECOAH4]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0110785]]
 +
*** [[B471_RS0115580]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ECOAH6]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0110785]]
 +
*** [[B471_RS0115580]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ECOAH7]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0110785]]
 +
*** [[B471_RS0115580]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ECOAH9ir]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0115580]]
 +
*** [[B471_RS0110785]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[FACOAL160]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS22560]]
 +
*** [[B471_RS0110780]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
* [[FACOAL180]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS22560]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[HACD1]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[MACCOAT]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0115615]]
 +
*** [[B471_RS0110565]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/34DHOXPEGOX 34DHOXPEGOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/3HOPCD 3HOPCD]
 +
* [http://bigg.ucsd.edu/universal/reactions/4ABUTD 4ABUTD]
 +
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOX 5HOXINDACTOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOXm 5HOXINDACTOXm]
 +
* [http://bigg.ucsd.edu/universal/reactions/AACPS1 AACPS1]
 +
* [http://bigg.ucsd.edu/universal/reactions/AACPS1_1 AACPS1_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/AACPS2 AACPS2]
 +
* [http://bigg.ucsd.edu/universal/reactions/AACPS3 AACPS3]
 +
* [http://bigg.ucsd.edu/universal/reactions/AACPS3_1 AACPS3_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/AACPS6 AACPS6]
 +
* [http://bigg.ucsd.edu/universal/reactions/AACPS6_1 AACPS6_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/AACPS8 AACPS8]
 +
* [http://bigg.ucsd.edu/universal/reactions/ABOR ABOR]
 +
* [http://bigg.ucsd.edu/universal/reactions/ABUTDm ABUTDm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOA100OR ACOA100OR]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOA120OR ACOA120OR]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOA140OR ACOA140OR]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOA160OR ACOA160OR]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOA40OR ACOA40OR]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOA60OR ACOA60OR]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOA80OR ACOA80OR]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAD1f ACOAD1f]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAD1fm ACOAD1fm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAD2f ACOAD2f]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAD3f ACOAD3f]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAD4f ACOAD4f]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAD5f ACOAD5f]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAD6f ACOAD6f]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACOAD7f ACOAD7f]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD22xi ALCD22xi]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD22xim ALCD22xim]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD23xi ALCD23xi]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALCD23xim ALCD23xim]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALDD20x ALDD20x]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALDD20xm ALDD20xm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALDH ALDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/C160CPT1 C160CPT1]
 +
* [http://bigg.ucsd.edu/universal/reactions/C160CPT2 C160CPT2]
 +
* [http://bigg.ucsd.edu/universal/reactions/C160CPT2rbc C160CPT2rbc]
 +
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLm C2M26DCOAHLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLx C2M26DCOAHLx]
 +
* [http://bigg.ucsd.edu/universal/reactions/CHOLD CHOLD]
 +
* [http://bigg.ucsd.edu/universal/reactions/CTECOAI6 CTECOAI6]
 +
* [http://bigg.ucsd.edu/universal/reactions/CTECOAI7 CTECOAI7]
 +
* [http://bigg.ucsd.edu/universal/reactions/CTECOAI8 CTECOAI8]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHACOAH DHACOAH]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECH_3hivcoa ECH_3hivcoa]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH11p ECOAH11p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12 ECOAH12]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12m ECOAH12m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1_1 ECOAH1_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1m ECOAH1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1x ECOAH1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH2_1 ECOAH2_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH2m ECOAH2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH3_1 ECOAH3_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH3m ECOAH3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH4m ECOAH4m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH4p ECOAH4p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH5 ECOAH5]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH5_1 ECOAH5_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH5m ECOAH5m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH5p ECOAH5p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH6m ECOAH6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH6p ECOAH6p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH7m ECOAH7m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH7p ECOAH7p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH9m ECOAH9m]
 +
* [http://bigg.ucsd.edu/universal/reactions/FACOAL100p FACOAL100p]
 +
* [http://bigg.ucsd.edu/universal/reactions/FACOAL120p FACOAL120p]
 +
* [http://bigg.ucsd.edu/universal/reactions/FACOAL141 FACOAL141]
 +
* [http://bigg.ucsd.edu/universal/reactions/FACOAL141p FACOAL141p]
 +
* [http://bigg.ucsd.edu/universal/reactions/FACOAL160p FACOAL160p]
 +
* [http://bigg.ucsd.edu/universal/reactions/FACOAL80p FACOAL80p]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLACO GLACO]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLACOm GLACOm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLCOAS GLCOAS]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUTCOADHc GLUTCOADHc]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUTCOADHm GLUTCOADHm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYALDDr GLYALDDr]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD10p HACD10p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1_1 HACD1_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1i HACD1i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1m HACD1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1x HACD1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2 HACD2]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2_1 HACD2_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2i HACD2i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2m HACD2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3 HACD3]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3_1 HACD3_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3i HACD3i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3m HACD3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4 HACD4]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4i HACD4i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4m HACD4m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4p HACD4p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5 HACD5]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5i HACD5i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5m HACD5m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5p HACD5p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6 HACD6]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6i HACD6i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6m HACD6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6p HACD6p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7 HACD7]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7i HACD7i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7m HACD7m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7p HACD7p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD9 HACD9]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD9m HACD9m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACDp HACDp]
 +
* [http://bigg.ucsd.edu/universal/reactions/HADPCOADH3 HADPCOADH3]
 +
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp HBCO_nadp]
 +
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp_m HBCO_nadp_m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HIBDkt HIBDkt]
 +
* [http://bigg.ucsd.edu/universal/reactions/HMNO HMNO]
 +
* [http://bigg.ucsd.edu/universal/reactions/IMACTD IMACTD]
 +
* [http://bigg.ucsd.edu/universal/reactions/IMACTD_m IMACTD_m]
 +
* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
 +
* [http://bigg.ucsd.edu/universal/reactions/KATp KATp]
 +
* [http://bigg.ucsd.edu/universal/reactions/LIDOMO LIDOMO]
 +
* [http://bigg.ucsd.edu/universal/reactions/NABTNO NABTNO]
 +
* [http://bigg.ucsd.edu/universal/reactions/NABTNOm NABTNOm]
 +
* [http://bigg.ucsd.edu/universal/reactions/OGCOAAT OGCOAAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/P4503A43r P4503A43r]
 +
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOX PYLALDOX]
 +
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOXm PYLALDOXm]
 +
* [http://bigg.ucsd.edu/universal/reactions/RAHY RAHY]
 +
* [http://bigg.ucsd.edu/universal/reactions/RNADRr RNADRr]
 +
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLm T2M26DCOAHLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLx T2M26DCOAHLx]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: common_name=Fatty acid degradation}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28530 28530]
+
{{#set: reaction found=17}}
−
* EC Number : 3.1.3.5
+
{{#set: total reaction=167}}
−
* MetaNetX (MNX) Equation : MNXR102029
+
{{#set: completion rate=10.0}}
−
* KEGG Reaction : R02719
+
−
* BioCyc : META:XMPXAN-RXN
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=5'-nucleotidase (XMP)}}
+
−
{{#set: gene associated=B471_RS0110685}}
+
−
{{#set: in pathway=map00240|map01100|map01110|map00230|map00760}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction source=orthology-bsubtilis}}
+
−
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 15:15, 21 March 2018

Pathway map00071

  • common_name:
    • Fatty acid degradation
  • Synonym(s):

Reaction(s) found

17 reactions found over 167 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=Map00071&oldid=6451"