Difference between revisions of "IPPS"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PGM PGM] == * direction: ** REVERSIBLE * common name: ** Phosphoglycerate mutase * Synonym(s): ==...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/IPPS IPPS] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-isopropylmalate synthase * Synonym(...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PGM PGM] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/IPPS IPPS] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Phosphoglycerate mutase
+
** 2-isopropylmalate synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[2pg]][c] '''<=>''' 1.0 [[3pg]][c]
+
** 1.0 [[3mob]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[accoa]][c] '''=>''' 1.0 [[coa]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[3c3hmp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 D-Glycerate 2-phosphate[c] '''<=>''' 1.0 3-Phospho-D-glycerate[c]
+
** 1.0 3-Methyl-2-oxobutanoate[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 Acetyl-CoA[c] '''=>''' 1.0 Coenzyme A[c] '''+''' 1.0 H+[c] '''+''' 1.0 3-Carboxy-3-hydroxy-4-methylpentanoate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0119315]]
+
* Gene: [[B471_RS21670]]
−
** [[pantograph]]-[[cljungdahlii]]
+
** Source: [[orthology-cljungdahlii]]
 +
** Source: [[orthology-bsubtilis]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
Line 22: Line 23:
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
** '''212''' reactions found over '''1054''' reactions in the full pathway
 
** '''212''' reactions found over '''1054''' reactions in the full pathway
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
* [[map00290]]: [http://www.genome.jp/dbget-bin/www_bget?map00290 map00290]
−
** '''101''' reactions found over '''715''' reactions in the full pathway
+
** '''15''' reactions found over '''49''' reactions in the full pathway
−
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
+
* [[map01210]]: [http://www.genome.jp/dbget-bin/www_bget?map01210 map01210]
−
** '''51''' reactions found over '''220''' reactions in the full pathway
+
** '''26''' reactions found over '''80''' reactions in the full pathway
 +
* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
 +
** '''22''' reactions found over '''163''' reactions in the full pathway
 
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 
** '''78''' reactions found over '''228''' reactions in the full pathway
 
** '''78''' reactions found over '''228''' reactions in the full pathway
−
* [[map00680]]: [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680]
 
−
** '''14''' reactions found over '''75''' reactions in the full pathway
 
−
* [[map00010]]: [http://www.genome.jp/dbget-bin/www_bget?map00010 map00010]
 
−
** '''20''' reactions found over '''149''' reactions in the full pathway
 
−
* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
 
−
** '''24''' reactions found over '''133''' reactions in the full pathway
 
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
−
** '''148''' reactions found over '''694''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-cljungdahlii]]
 
** Source: [[orthology-cljungdahlii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-bsubtilis]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* EC Number : 5.4.2.1
 
−
* BioCyc : META:3PGAREARR-RXN
 
−
* MetaNetX (MNX) Equation : MNXR102547
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15901 15901]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21524 21524]
−
* Reactome : REACT_R-ATH-71445
+
* EC Number : 2.3.3.13
−
* KEGG Reaction : R01518
+
* MetaNetX (MNX) Equation : MNXR100879
−
{{#set: direction=REVERSIBLE}}
+
* KEGG Reaction : R01213
−
{{#set: common name=Phosphoglycerate mutase}}
+
* BioCyc : META:2-ISOPROPYLMALATESYN-RXN
−
{{#set: gene associated=B471_RS0119315}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: in pathway=map01100|map01110|map01120|map01200|map01230|map00680|map00010|map00260|map01130}}
+
{{#set: common name=2-isopropylmalate synthase}}
 +
{{#set: gene associated=B471_RS21670}}
 +
{{#set: in pathway=map01100|map01110|map00290|map01210|map00620|map01230}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=orthology-cljungdahlii}}
+
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:36, 21 March 2018

Reaction IPPS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 2-isopropylmalate synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 3-Methyl-2-oxobutanoate[c] + 1.0 H2O H2O[c] + 1.0 Acetyl-CoA[c] => 1.0 Coenzyme A[c] + 1.0 H+[c] + 1.0 3-Carboxy-3-hydroxy-4-methylpentanoate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 2.3.3.13
  • MetaNetX (MNX) Equation : MNXR100879
  • KEGG Reaction : R01213
  • BioCyc : META:2-ISOPROPYLMALATESYN-RXN




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