Difference between revisions of "PSD160"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00310 map00310] == * common_name: ** Lysine degradation * Synonym(s): == Reaction(s) found == '''...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PSD160 PSD160] == * direction: ** LEFT-TO-RIGHT * common name: ** Phosphatidylserine decarboxylase...")
 
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00310 map00310] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/PSD160 PSD160] ==
−
* common_name:
+
* direction:
−
** Lysine degradation
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** Phosphatidylserine decarboxylase (n-C16:0)
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''12''' reactions found over '''138''' reactions in the full pathway
+
* With identifiers:
−
* [[ABUTD]]
+
** 1.0 [[h]][c] '''+''' 1.0 [[ps160]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[pe160]][c]
−
** 2 associated gene(s):
+
* With common name(s):
−
*** [[B471_RS0119455]]
+
** 1.0 H+[c] '''+''' 1.0 Phosphatidylserine (dihexadecanoyl, n-C16:0)[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)[c]
−
*** [[B471_RS0115620]]
+
 
−
** 1 reconstruction source(s) associated:
+
== Genes associated with this reaction  ==
−
*** [[orthology-bsubtilis]]
+
== Pathways  ==
−
* [[ACACT1r]]
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** 1 associated gene(s):
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
−
*** [[B471_RS0105350]]
+
* [[map00564]]: [http://www.genome.jp/dbget-bin/www_bget?map00564 map00564]
−
** 1 reconstruction source(s) associated:
+
** '''36''' reactions found over '''134''' reactions in the full pathway
−
*** [[orthology-bsubtilis]]
+
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
−
* [[ACACT2r]]
+
** '''212''' reactions found over '''1054''' reactions in the full pathway
−
** 2 associated gene(s):
+
== Reconstruction information  ==
−
*** [[B471_RS0110565]]
+
* Category: [[manual]]
−
*** [[B471_RS0115615]]
+
** Source: [[manual-reaction_to_add_delete]]
−
** 1 reconstruction source(s) associated:
+
*** Comment: [[reaction added from literature evidence or biological expertise]]
−
*** [[orthology-bsubtilis]]
+
−
* [[ACACT3r]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0110565]]
+
−
*** [[B471_RS0115615]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[ACACT4r]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0110565]]
+
−
*** [[B471_RS0115615]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[ACACT7r]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0115615]]
+
−
*** [[B471_RS0110565]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[ACOAD1]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0108385]]
+
−
*** [[B471_RS0110365]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[ECOAH1]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
+
−
* [[ECOAH9ir]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0115580]]
+
−
*** [[B471_RS0110785]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[HACD1]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
+
−
* [[LYSDC]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS21410]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
* [[MACCOAT]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0115615]]
+
−
*** [[B471_RS0110565]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
== Reaction(s) not found ==
+
−
* [http://bigg.ucsd.edu/universal/reactions/1PPDCRc 1PPDCRc]
+
−
* [http://bigg.ucsd.edu/universal/reactions/1PPDCRp 1PPDCRp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/2OXOADOXm 2OXOADOXm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3HOPCD 3HOPCD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/4ABUTD 4ABUTD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOX 5HOXINDACTOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOXm 5HOXINDACTOXm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AABTN AABTN]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AASAD2 AASAD2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AASAD3 AASAD3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AASAD3m AASAD3m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AATA AATA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ABOR ABOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ABUTDm ABUTDm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AKGDH AKGDH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AKGDHe2r AKGDHe2r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AKGDa AKGDa]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AKGDam AKGDam]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AKGDb AKGDb]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AKGDbm AKGDbm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AKGDm AKGDm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALATA_D ALATA_D]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDD20x ALDD20x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDD20xm ALDD20xm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALDH ALDH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AOXHEXCYCL AOXHEXCYCL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APENTAMAH APENTAMAH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APTNAT APTNAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BBHOX BBHOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLm C2M26DCOAHLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLx C2M26DCOAHLx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DHACOAH DHACOAH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECH_3hivcoa ECH_3hivcoa]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH11p ECOAH11p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12 ECOAH12]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12m ECOAH12m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1_1 ECOAH1_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1m ECOAH1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1x ECOAH1x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ECOAH9m ECOAH9m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GHMT3 GHMT3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GHMT3m GHMT3m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLACO GLACO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLACOm GLACOm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLCOAS GLCOAS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLCOASYNT GLCOASYNT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYALDDr GLYALDDr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD10p HACD10p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1_1 HACD1_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1i HACD1i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1m HACD1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD1x HACD1x]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD2 HACD2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD2_1 HACD2_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD2i HACD2i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD2m HACD2m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD3 HACD3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD3_1 HACD3_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD3i HACD3i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD3m HACD3m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD4 HACD4]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD4i HACD4i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD4m HACD4m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD4p HACD4p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD5 HACD5]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD5i HACD5i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD5m HACD5m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD5p HACD5p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD6 HACD6]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD6i HACD6i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD6m HACD6m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD6p HACD6p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD7 HACD7]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD7i HACD7i]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD7m HACD7m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD7p HACD7p]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD9 HACD9]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACD9m HACD9m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HACDp HACDp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HADPCOADH3 HADPCOADH3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp HBCO_nadp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp_m HBCO_nadp_m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HIBDkt HIBDkt]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HMNO HMNO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/IMACTD IMACTD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/IMACTD_m IMACTD_m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LPCOXc LPCOXc]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LPCOXp LPCOXp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LYSAM LYSAM]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LYSMO LYSMO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LYSMTF3n LYSMTF3n]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LYSOXp LYSOXp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LYSRC LYSRC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/NABTNO NABTNO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/NABTNOm NABTNOm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/OXOADLR OXOADLR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/OXPTNDH OXPTNDH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPD2CSPp PPD2CSPp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOX PYLALDOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PYLALDOXm PYLALDOXm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SACCD1 SACCD1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SACCD2 SACCD2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SACCD3m SACCD3m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SACCD4m SACCD4m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLm T2M26DCOAHLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLx T2M26DCOAHLx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TMABADH TMABADH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TMLYSOX TMLYSOX]
+
 
== External links  ==
 
== External links  ==
−
{{#set: common_name=Lysine degradation}}
+
* MetaNetX (MNX) Equation : MNXR103232
−
{{#set: reaction found=12}}
+
* EC Number : 4.1.1.65
−
{{#set: total reaction=138}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: completion rate=9.0}}
+
{{#set: common name=Phosphatidylserine decarboxylase (n-C16:0)}}
 +
{{#set: in pathway=map01100|map00564|map01110}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=manual-reaction_to_add_delete}}
 +
{{#set: reconstruction comment=reaction added from literature evidence or biological expertise}}

Latest revision as of 15:38, 21 March 2018

Reaction PSD160

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Phosphatidylserine decarboxylase (n-C16:0)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H+[c] + 1.0 Phosphatidylserine (dihexadecanoyl, n-C16:0)[c] => 1.0 CO2 CO2[c] + 1.0 Phosphatidylethanolamine (dihexadecanoyl, n-C16:0)[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR103232
  • EC Number : 4.1.1.65




Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=PSD160&oldid=7526"