Difference between revisions of "OMCDC"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030] == * common_name: ** Pentose phosphate pathway * Synonym(s): == Reaction(s) found...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/OMCDC OMCDC] == * direction: ** LEFT-TO-RIGHT * common name: ** 2-Oxo-4-methyl-3-carboxypentanoate...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/OMCDC OMCDC] ==
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* common_name:
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* direction:
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** Pentose phosphate pathway
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** LEFT-TO-RIGHT
 +
* common name:
 +
** 2-Oxo-4-methyl-3-carboxypentanoate decarboxylation
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''20''' reactions found over '''69''' reactions in the full pathway
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* With identifiers:
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* [[DRPA]]
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** 1.0 [[3c4mop]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[4mop]][c] '''+''' 1.0 [[co2]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[B471_RS0113280]]
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** 1.0 3-Carboxy-4-methyl-2-oxopentanoate[c] '''+''' 1.0 H+[c] '''=>''' 1.0 4-Methyl-2-oxopentanoate[c] '''+''' 1.0 CO2 CO2[c]
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** 2 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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== Genes associated with this reaction  ==
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*** [[orthology-bsubtilis]]
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== Pathways  ==
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* [[EDA]]
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* [[map01210]]: [http://www.genome.jp/dbget-bin/www_bget?map01210 map01210]
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** 1 associated gene(s):
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** '''26''' reactions found over '''80''' reactions in the full pathway
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*** [[B471_RS0117335]]
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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** 1 reconstruction source(s) associated:
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** '''471''' reactions found over '''2349''' reactions in the full pathway
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*** [[orthology-aferrooxidans]]
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* [[map00660]]: [http://www.genome.jp/dbget-bin/www_bget?map00660 map00660]
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* [[EDD]]
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** '''5''' reactions found over '''21''' reactions in the full pathway
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** 1 associated gene(s):
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* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
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*** [[B471_RS0109235]]
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** '''212''' reactions found over '''1054''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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* [[map00290]]: [http://www.genome.jp/dbget-bin/www_bget?map00290 map00290]
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*** [[orthology-aferrooxidans]]
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** '''15''' reactions found over '''49''' reactions in the full pathway
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* [[FBA]]
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== Reconstruction information  ==
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** 2 associated gene(s):
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* Category: [[manual]]
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*** [[B471_RS0118210]]
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** Source: [[manual-reaction_to_add_delete]]
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*** [[B471_RS0101615]]
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*** Comment: [[reaction added from literature evidence or biological expertise]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[FBA2]]
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** 1 associated gene(s):
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*** [[B471_RS0101615]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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* [[FBA3]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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−
*** [[manual-reaction_to_add_delete]]
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−
* [[FBP]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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−
*** [[manual-reaction_to_add_delete]]
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−
* [[G6PDH2r]]
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** 1 associated gene(s):
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*** [[B471_RS0108275]]
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** 1 reconstruction source(s) associated:
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−
*** [[orthology-bsubtilis]]
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* [[GND]]
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** 2 associated gene(s):
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*** [[B471_RS0108280]]
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*** [[B471_RS0107325]]
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** 1 reconstruction source(s) associated:
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−
*** [[orthology-cljungdahlii]]
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* [[GNK]]
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** 1 associated gene(s):
+
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*** [[B471_RS0113565]]
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** 1 reconstruction source(s) associated:
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−
*** [[orthology-cljungdahlii]]
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* [[PFK]]
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** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
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−
*** [[manual-reaction_to_add_delete]]
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−
* [[PGI]]
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** 1 associated gene(s):
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*** [[B471_RS0108285]]
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** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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* [[PPM2]]
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** 1 associated gene(s):
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*** [[B471_RS22550]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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* [[PRPPS]]
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** 1 associated gene(s):
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*** [[B471_RS0107450]]
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** 3 reconstruction source(s) associated:
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−
*** [[orthology-cljungdahlii]]
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−
*** [[orthology-bsubtilis]]
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−
*** [[orthology-aferrooxidans]]
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* [[RBK]]
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** 1 associated gene(s):
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*** [[B471_RS0117105]]
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−
** 1 reconstruction source(s) associated:
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−
*** [[orthology-bsubtilis]]
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* [[RPE]]
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** 1 associated gene(s):
+
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*** [[B471_RS23765]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[RPI]]
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** 2 associated gene(s):
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*** [[B471_RS0116940]]
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*** [[B471_RS0116500]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[TALA]]
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** 3 associated gene(s):
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*** [[B471_RS0106410]]
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*** [[B471_RS0102315]]
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*** [[B471_RS0108285]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
+
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*** [[orthology-aferrooxidans]]
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* [[TKT1]]
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** 1 associated gene(s):
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*** [[B471_RS0108290]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[TKT2]]
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** 1 associated gene(s):
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*** [[B471_RS0108290]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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−
== Reaction(s) not found ==
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* [http://bigg.ucsd.edu/universal/reactions/2DGLCNRy 2DGLCNRy]
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* [http://bigg.ucsd.edu/universal/reactions/2DHGLCK 2DHGLCK]
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* [http://bigg.ucsd.edu/universal/reactions/BFBP BFBP]
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* [http://bigg.ucsd.edu/universal/reactions/BFBPh BFBPh]
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* [http://bigg.ucsd.edu/universal/reactions/DASCBH DASCBH]
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* [http://bigg.ucsd.edu/universal/reactions/DDGLK DDGLK]
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* [http://bigg.ucsd.edu/universal/reactions/DDPGALA DDPGALA]
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* [http://bigg.ucsd.edu/universal/reactions/DKGLCNR2y DKGLCNR2y]
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* [http://bigg.ucsd.edu/universal/reactions/DRBK DRBK]
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* [http://bigg.ucsd.edu/universal/reactions/FBA3hi FBA3hi]
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* [http://bigg.ucsd.edu/universal/reactions/FBAf FBAf]
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* [http://bigg.ucsd.edu/universal/reactions/FBAh FBAh]
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* [http://bigg.ucsd.edu/universal/reactions/FBAm FBAm]
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* [http://bigg.ucsd.edu/universal/reactions/FPGPL FPGPL]
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* [http://bigg.ucsd.edu/universal/reactions/G6PADH G6PADH]
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* [http://bigg.ucsd.edu/universal/reactions/G6PADHh G6PADHh]
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* [http://bigg.ucsd.edu/universal/reactions/G6PBDH G6PBDH]
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* [http://bigg.ucsd.edu/universal/reactions/G6PBDHh G6PBDHh]
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* [http://bigg.ucsd.edu/universal/reactions/G6PDH1 G6PDH1]
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* [http://bigg.ucsd.edu/universal/reactions/G6PDH1er G6PDH1er]
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* [http://bigg.ucsd.edu/universal/reactions/G6PDH2er G6PDH2er]
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* [http://bigg.ucsd.edu/universal/reactions/G6PI G6PI]
+
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* [http://bigg.ucsd.edu/universal/reactions/G6PI2 G6PI2]
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* [http://bigg.ucsd.edu/universal/reactions/G6PI3 G6PI3]
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* [http://bigg.ucsd.edu/universal/reactions/G6PI_1 G6PI_1]
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* [http://bigg.ucsd.edu/universal/reactions/G6PIh G6PIh]
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−
* [http://bigg.ucsd.edu/universal/reactions/GADktpp GADktpp]
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−
* [http://bigg.ucsd.edu/universal/reactions/GLYCK2 GLYCK2]
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* [http://bigg.ucsd.edu/universal/reactions/GNDer GNDer]
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−
* [http://bigg.ucsd.edu/universal/reactions/GNKh GNKh]
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−
* [http://bigg.ucsd.edu/universal/reactions/PFK_3 PFK_3]
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* [http://bigg.ucsd.edu/universal/reactions/PFK_adp PFK_adp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PFK_ppi PFK_ppi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PFKh PFKh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGDHh PGDHh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGIA PGIA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGIAh PGIAh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGIBh PGIBh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGL PGL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGLCNDH PGLCNDH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGLer PGLer]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGLh PGLh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/R15BPK R15BPK]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RPDPK RPDPK]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RPEh RPEh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RPIh RPIh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TAh TAh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TKT1h TKT1h]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TKT2h TKT2h]
+
 
== External links  ==
 
== External links  ==
−
{{#set: common_name=Pentose phosphate pathway}}
+
* RHEA:
−
{{#set: reaction found=20}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25078 25078]
−
{{#set: total reaction=69}}
+
* BioCyc : META:RXN-7800
−
{{#set: completion rate=29.0}}
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* MetaNetX (MNX) Equation : MNXR102180
 +
* KEGG Reaction : R01652
 +
* EC Number : 1.1.1.85
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=2-Oxo-4-methyl-3-carboxypentanoate decarboxylation}}
 +
{{#set: in pathway=map01210|map01100|map00660|map01110|map00290}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=manual-reaction_to_add_delete}}
 +
{{#set: reconstruction comment=reaction added from literature evidence or biological expertise}}

Latest revision as of 15:38, 21 March 2018

Reaction OMCDC

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 2-Oxo-4-methyl-3-carboxypentanoate decarboxylation
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 3-Carboxy-4-methyl-2-oxopentanoate[c] + 1.0 H+[c] => 1.0 4-Methyl-2-oxopentanoate[c] + 1.0 CO2 CO2[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:RXN-7800
  • MetaNetX (MNX) Equation : MNXR102180
  • KEGG Reaction : R01652
  • EC Number : 1.1.1.85




Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=OMCDC&oldid=7549"