|
|
Line 1: |
Line 1: |
− | [[Category:Pathway]] | + | [[Category:Reaction]] |
− | == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00280 map00280] == | + | == Reaction [http://bigg.ucsd.edu/universal/reactions/ACOAD1 ACOAD1] == |
− | * common_name: | + | * direction: |
− | ** Valine, leucine and isoleucine degradation | + | ** REVERSIBLE |
| + | * common name: |
| + | ** Acyl-CoA dehydrogenase (butanoyl-CoA) |
| * Synonym(s): | | * Synonym(s): |
| | | |
− | == Reaction(s) found == | + | == Reaction Formula == |
− | '''16''' reactions found over '''155''' reactions in the full pathway
| + | * With identifiers: |
− | * [[ABUTD]] | + | ** 1.0 [[b2coa]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[nadh]][c] '''<=>''' 1.0 [[nad]][c] '''+''' 1.0 [[btcoa]][c] |
− | ** 2 associated gene(s):
| + | * With common name(s): |
− | *** [[B471_RS0119455]]
| + | ** 1.0 Crotonoyl-CoA[c] '''+''' 1.0 H+[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''<=>''' 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 Butanoyl-CoA[c] |
− | *** [[B471_RS0115620]]
| + | |
− | ** 1 reconstruction source(s) associated: | + | == Genes associated with this reaction == |
− | *** [[orthology-bsubtilis]]
| + | Genes have been associated with this reaction based on different elements listed below. |
− | * [[ACACT1r]]
| + | * Gene: [[B471_RS0108385]] |
− | ** 1 associated gene(s):
| + | ** Source: [[orthology-bsubtilis]] |
− | *** [[B471_RS0105350]]
| + | * Gene: [[B471_RS0110365]] |
− | ** 1 reconstruction source(s) associated:
| + | ** Source: [[orthology-bsubtilis]] |
− | *** [[orthology-bsubtilis]]
| + | == Pathways == |
− | * [[ACACT2r]]
| + | * [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100] |
− | ** 2 associated gene(s):
| + | ** '''471''' reactions found over '''2349''' reactions in the full pathway |
− | *** [[B471_RS0110565]]
| + | * [[map00310]]: [http://www.genome.jp/dbget-bin/www_bget?map00310 map00310] |
− | *** [[B471_RS0115615]]
| + | ** '''12''' reactions found over '''138''' reactions in the full pathway |
− | ** 1 reconstruction source(s) associated:
| + | * [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200] |
− | *** [[orthology-bsubtilis]]
| + | ** '''51''' reactions found over '''220''' reactions in the full pathway |
− | * [[ACACT3r]]
| + | * [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120] |
− | ** 2 associated gene(s):
| + | ** '''101''' reactions found over '''715''' reactions in the full pathway |
− | *** [[B471_RS0110565]]
| + | * [[map00650]]: [http://www.genome.jp/dbget-bin/www_bget?map00650 map00650] |
− | *** [[B471_RS0115615]]
| + | ** '''21''' reactions found over '''156''' reactions in the full pathway |
− | ** 1 reconstruction source(s) associated:
| + | == Reconstruction information == |
− | *** [[orthology-bsubtilis]]
| + | * Category: [[orthology]] |
− | * [[ACACT4r]]
| + | ** Source: [[orthology-bsubtilis]] |
− | ** 2 associated gene(s):
| + | *** Tool: [[pantograph]] |
− | *** [[B471_RS0110565]]
| + | |
− | *** [[B471_RS0115615]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[ACACT7r]]
| + | |
− | ** 2 associated gene(s): | + | |
− | *** [[B471_RS0115615]]
| + | |
− | *** [[B471_RS0110565]]
| + | |
− | ** 1 reconstruction source(s) associated: | + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[ASPO1]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS23075]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[ECOAH9ir]]
| + | |
− | ** 2 associated gene(s):
| + | |
− | *** [[B471_RS0115580]]
| + | |
− | *** [[B471_RS0110785]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[HACD1]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[HMGL]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0108405]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[ILETA]]
| + | |
− | ** 4 associated gene(s):
| + | |
− | *** [[B471_RS0110105]]
| + | |
− | *** [[B471_RS0102340]]
| + | |
− | *** [[B471_RS0106435]]
| + | |
− | *** [[B471_RS0109150]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[LEUTA]]
| + | |
− | ** 4 associated gene(s):
| + | |
− | *** [[B471_RS0106435]] | + | |
− | *** [[B471_RS0110105]]
| + | |
− | *** [[B471_RS0102340]]
| + | |
− | *** [[B471_RS0109150]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]] | + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[MACCOAT]]
| + | |
− | ** 2 associated gene(s):
| + | |
− | *** [[B471_RS0115615]]
| + | |
− | *** [[B471_RS0110565]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[OCOAT1]] | + | |
− | ** 2 associated gene(s):
| + | |
− | *** [[B471_RS0115600]]
| + | |
− | *** [[B471_RS0115595]] | + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[PPCOAC]]
| + | |
− | ** 2 associated gene(s):
| + | |
− | *** [[B471_RS0108915]]
| + | |
− | *** [[B471_RS0108400]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[VALTA]]
| + | |
− | ** 4 associated gene(s):
| + | |
− | *** [[B471_RS0109150]]
| + | |
− | *** [[B471_RS0110105]]
| + | |
− | *** [[B471_RS0106435]]
| + | |
− | *** [[B471_RS0102340]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | == Reaction(s) not found == | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/3HBCOAHL 3HBCOAHL] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/3HBCOAHLm 3HBCOAHLm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/3HOPCD 3HOPCD]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/4ABUTD 4ABUTD]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/4M2OPLOXRD 4M2OPLOXRD]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTO2OX 5HOXINDACTO2OX] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOX 5HOXINDACTOX] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOXm 5HOXINDACTOXm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AACOAT AACOAT] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ABOR ABOR]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ABUTDm ABUTDm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACOAD8m ACOAD8m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ALDD20x ALDD20x] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ALDD20xm ALDD20xm] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ALDH ALDH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/APATr APATr] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ASPOm ASPOm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/BCTA_glu_h BCTA_glu_h]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/BCTA_val_h BCTA_val_h]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/BCTAh BCTAh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLm C2M26DCOAHLm] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLx C2M26DCOAHLx] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CITALALDOR CITALALDOR]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/D3AIBTm D3AIBTm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DHACOAH DHACOAH] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DHRT_2mbcoa DHRT_2mbcoa]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DHRT_ivcoa DHRT_ivcoa]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECH_3hivcoa ECH_3hivcoa]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH11p ECOAH11p] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH12 ECOAH12] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH12m ECOAH12m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH9m ECOAH9m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GCC2cm GCC2cm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GCCc GCCc] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GCCcm GCCcm] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLACO GLACO] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLACOm GLACOm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLYALDDr GLYALDDr]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD10p HACD10p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD1_1 HACD1_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD1i HACD1i]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD1m HACD1m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD1x HACD1x]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD2 HACD2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD2_1 HACD2_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD2i HACD2i]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD2m HACD2m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD3 HACD3]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD3_1 HACD3_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD3i HACD3i]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD3m HACD3m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD4 HACD4]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD4i HACD4i]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD4m HACD4m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD4p HACD4p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD5 HACD5]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD5i HACD5i]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD5m HACD5m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD5p HACD5p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD6 HACD6]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD6i HACD6i]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD6m HACD6m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD6p HACD6p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD7 HACD7]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD7i HACD7i]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD7m HACD7m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD7p HACD7p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD9 HACD9]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD9m HACD9m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACDp HACDp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HADPCOADH3 HADPCOADH3]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp HBCO_nadp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp_m HBCO_nadp_m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HIBDkt HIBDkt]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HIBDm HIBDm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HIBH HIBH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HMGCOAS HMGCOAS]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HMGCOASm HMGCOASm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HMGL_1 HMGL_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HMGLm HMGLm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HMGLx HMGLx]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HMNO HMNO]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ILETAm ILETAm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/IMACTD IMACTD]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/IMACTD_m IMACTD_m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/KATp KATp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LEUTAi LEUTAi]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LEUTAm LEUTAm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MBCOAi MBCOAi]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MCCC MCCC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MCCCrm MCCCrm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MCTC MCTC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MGCH MGCH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MGCHrm MGCHrm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MHGS MHGS]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MME MME]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MMEm MMEm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MMM2 MMM2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MMMm MMMm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MMSAD1 MMSAD1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MMSAD1m MMSAD1m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MMSAD3 MMSAD3]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MMSAD3m MMSAD3m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MMSDH MMSDH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MMTSAO MMTSAO]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MOD MOD]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MOD_3mhtpp MOD_3mhtpp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MOD_3mop MOD_3mop]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MOD_4mop MOD_4mop]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/NABTNO NABTNO]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/NABTNOm NABTNOm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/OCOAT1m OCOAT1m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/OGCOAAT OGCOAAT]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PDHcr PDHcr]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PDHe3hr PDHe3hr]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PPCOACm PPCOACm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PYLALDOX PYLALDOX]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PYLALDOXm PYLALDOXm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLm T2M26DCOAHLm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLx T2M26DCOAHLx]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/VALTAim VALTAim]
| + | |
| == External links == | | == External links == |
− | {{#set: common_name=Valine, leucine and isoleucine degradation}} | + | * EC Number : 1.3.1.44 |
− | {{#set: reaction found=16}} | + | * MetaNetX (MNX) Equation : MNXR95305 |
− | {{#set: total reaction=155}} | + | * KEGG Reaction : R01171 |
− | {{#set: completion rate=10.0}} | + | * BioCyc : META:RXN-12558 |
| + | {{#set: direction=REVERSIBLE}} |
| + | {{#set: common name=Acyl-CoA dehydrogenase (butanoyl-CoA)}} |
| + | {{#set: gene associated=B471_RS0108385|B471_RS0110365}} |
| + | {{#set: in pathway=map01100|map00310|map01200|map01120|map00650}} |
| + | {{#set: reconstruction category=orthology}} |
| + | {{#set: reconstruction source=orthology-bsubtilis}} |
| + | {{#set: reconstruction tool=pantograph}} |
Genes have been associated with this reaction based on different elements listed below.