Difference between revisions of "Main Page"
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(Created page with "== CUTIGEM description == == Automatic reconstruction with [http://aureme.genouest.org AuReMe] == Model summary: summary Download '''AuReMe''' Input/Out...") |
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** Download this [[MEDIA:Reaction_creator.csv|form]] | ** Download this [[MEDIA:Reaction_creator.csv|form]] | ||
* '''Follow the examples given in the form(s) to correctly share your suggestions''' | * '''Follow the examples given in the form(s) to correctly share your suggestions''' | ||
| − | * Send the filled form(s) to: | + | * Send the filled form(s) to: gem-aureme@inria.fr |
Latest revision as of 16:10, 21 March 2018
CUTIGEM description
Automatic reconstruction with AuReMe
Model summary: summary
Download AuReMe Input/Output [LINK OR MEDIA data]
The automatic reconstruction of S_thermosulfidooxidans_str_Cutipay results to a Genome scale Model containing 1067 reactions, 855 metabolites, 545 genes and 108 pathways. This GeM was obtained based on the following sources:
- Based on orthology data:
- Tool: Pantograph
- From template AFERROOXIDANS creation of a metabolic network containing: 221 reactions
- From template CLJUNGDAHLII creation of a metabolic network containing: 341 reactions
- From template BSUBTILIS creation of a metabolic network containing: 460 reactions
- Tool: Pantograph
- Based on expertise:
- 402 reaction(s) added
