Difference between revisions of "4ampm"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GLUSy GLUSy] == * direction: ** LEFT-TO-RIGHT * common name: ** Glutamate synthase (NADPH) * Synony...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK1 NDPK1] == * direction: ** REVERSIBLE * common name: ** Nucleoside-diphosphate kinase (ATP:GDP...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/GLUSy GLUSy] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/NDPK1 NDPK1] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Glutamate synthase (NADPH)
+
** Nucleoside-diphosphate kinase (ATP:GDP)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[nadph]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[akg]][c] '''+''' 1.0 [[gln__L]][c] '''=>''' 2.0 [[glu__L]][c] '''+''' 1.0 [[nadp]][c]
+
** 1.0 [[gdp]][c] '''+''' 1.0 [[atp]][c] '''<=>''' 1.0 [[adp]][c] '''+''' 1.0 [[gtp]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''+''' 1.0 H+[c] '''+''' 1.0 2-Oxoglutarate[c] '''+''' 1.0 L-Glutamine[c] '''=>''' 2.0 L-Glutamate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate[c]
+
** 1.0 GDP C10H12N5O11P2[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''<=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 GTP C10H12N5O14P3[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[B471_RS0100900]]
 +
** [[pantograph]]-[[bsubtilis]]
 +
** [[pantograph]]-[[aferrooxidans]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
+
** '''68''' reactions found over '''244''' reactions in the full pathway
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
−
** '''212''' reactions found over '''1054''' reactions in the full pathway
+
−
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
+
−
** '''101''' reactions found over '''715''' reactions in the full pathway
+
−
* [[map00910]]: [http://www.genome.jp/dbget-bin/www_bget?map00910 map00910]
+
−
** '''5''' reactions found over '''36''' reactions in the full pathway
+
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
+
−
** '''78''' reactions found over '''228''' reactions in the full pathway
+
−
* [[map00250]]: [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250]
+
−
** '''22''' reactions found over '''93''' reactions in the full pathway
+
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
** '''148''' reactions found over '''694''' reactions in the full pathway
 
** '''148''' reactions found over '''694''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''212''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''471''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 +
** '''64''' reactions found over '''298''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[orthology]]
−
** [[reaction added from literature evidence or biological expertise]]
+
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-aferrooxidans]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15501 15501]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27686 27686]
−
* BioCyc : META:GLUTAMATESYN-RXN
+
* EC Number : 2.7.4.6
−
* MetaNetX (MNX) Equation : MNXR100291
+
* MetaNetX (MNX) Equation : MNXR96119
−
* KEGG Reaction : R00114
+
* KEGG Reaction : R00330
−
* EC Number : 1.4.1.13
+
* BioCyc : META:GDPKIN-RXN
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=Glutamate synthase (NADPH)}}
+
{{#set: common name=Nucleoside-diphosphate kinase (ATP:GDP)}}
−
{{#set: in pathway=map01100|map01110|map01120|map00910|map01230|map00250|map01130}}
+
{{#set: gene associated=B471_RS0100900}}
−
{{#set: reconstruction category=manual}}
+
{{#set: in pathway=map00240|map01130|map01110|map01100|map00230}}
−
{{#set: reconstruction source=reaction added from literature evidence or biological expertise}}
+
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-bsubtilis|orthology-aferrooxidans}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 23:36, 20 March 2018

Reaction NDPK1

  • direction:
    • REVERSIBLE
  • common name:
    • Nucleoside-diphosphate kinase (ATP:GDP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 GDP C10H12N5O11P2[c] + 1.0 ATP C10H12N5O13P3[c] <=> 1.0 ADP C10H12N5O10P2[c] + 1.0 GTP C10H12N5O14P3[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 2.7.4.6
  • MetaNetX (MNX) Equation : MNXR96119
  • KEGG Reaction : R00330
  • BioCyc : META:GDPKIN-RXN




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