Difference between revisions of "Gdp"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/UREA UREA] == * direction: ** LEFT-TO-RIGHT * common name: ** Urease * Synonym(s): == Reaction For...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/HISDr_CUT HISDr_CUT] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/UREA UREA] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/HISDr_CUT HISDr_CUT] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
* common name:
 
** Urease
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[urea]][c] '''+''' 1.0 [[h2o]][c] '''+''' 2.0 [[h]][c] '''=>''' 2.0 [[nh4]][c] '''+''' 1.0 [[co2]][c]
+
** 1.0 [[his__L]][c] '''=>''' 1.0 [[nh4]][c] '''+''' 1.0 [[urcan]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 Urea CH4N2O[c] '''+''' 1.0 H2O H2O[c] '''+''' 2.0 H+[c] '''=>''' 2.0 Ammonium[c] '''+''' 1.0 CO2 CO2[c]
+
** 1.0 L-Histidine[c] '''=>''' 1.0 Ammonium[c] '''+''' 1.0 Urocanate C6H5N2O2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[B471_RS0116215]]
+
* [[B471_RS0107725]]
** [[pantograph]]-[[bsubtilis]]
+
** missing_rxn_creator
* [[B471_RS0116225]]
+
** [[pantograph]]-[[bsubtilis]]
+
* [[B471_RS0116220]]
+
** [[pantograph]]-[[bsubtilis]]
+
 
== Pathways  ==
 
== Pathways  ==
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''472''' reactions found over '''2349''' reactions in the full pathway
 
* [[map00220]]: [http://www.genome.jp/dbget-bin/www_bget?map00220 map00220]
 
** '''13''' reactions found over '''65''' reactions in the full pathway
 
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 
** '''64''' reactions found over '''298''' reactions in the full pathway
 
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 
** '''101''' reactions found over '''715''' reactions in the full pathway
 
* [[map00791]]: [http://www.genome.jp/dbget-bin/www_bget?map00791 map00791]
 
** '''1''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
+
* Category: [[manual]]
** [[pantograph]]:
+
** Source: [[manual-missing_rxn_creator]]
*** [[bsubtilis]]
+
*** Comment: [[reaction found from orthology but we fixed reversibility based on biological expertise]]
 
== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20557 20557]
 
* BioCyc : META:UREASE-RXN
 
* MetaNetX (MNX) Equation : MNXR105153
 
* KEGG Reaction : R00131
 
* EC Number : 3.5.1.5
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=Urease}}
+
{{#set: gene associated=B471_RS0107725}}
{{#set: gene associated=B471_RS0116215|B471_RS0116225|B471_RS0116220}}
+
{{#set: in pathway=}}
{{#set: in pathway=map01100|map00220|map00230|map01120|map00791}}
+
{{#set: reconstruction category=manual}}
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=manual-missing_rxn_creator}}
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction comment=reaction found from orthology but we fixed reversibility based on biological expertise}}
{{#set: reconstruction source=bsubtilis}}
+

Revision as of 23:41, 20 March 2018

Reaction HISDr_CUT

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 L-Histidine[c] => 1.0 Ammonium[c] + 1.0 Urocanate C6H5N2O2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links