Difference between revisions of "G1PACT"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/3OAS140 3OAS140] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-[acyl-carrier-protein...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GHMT2r GHMT2r] == * direction: ** REVERSIBLE * common name: ** Glycine hydroxymethyltransferase, re...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/3OAS140 3OAS140] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GHMT2r GHMT2r] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** 3-oxoacyl-[acyl-carrier-protein] synthase (n-C14:0)
+
** Glycine hydroxymethyltransferase, reversible
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[malACP]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[ddcaACP]][c] '''=>''' 1.0 [[3omrsACP]][c] '''+''' 1.0 [[co2]][c] '''+''' 1.0 [[ACP]][c]
+
** 1.0 [[thf]][c] '''+''' 1.0 [[ser__L]][c] '''<=>''' 1.0 [[h2o]][c] '''+''' 1.0 [[gly]][c] '''+''' 1.0 [[mlthf]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Malonyl-[acyl-carrier protein][c] '''+''' 1.0 H+[c] '''+''' 1.0 Dodecanoyl-ACP (n-C12:0ACP)[c] '''=>''' 1.0 3-Oxotetradecanoyl-[acyl-carrier protein][c] '''+''' 1.0 CO2 CO2[c] '''+''' 1.0 Acyl carrier protein[c]
+
** 1.0 5,6,7,8-Tetrahydrofolate[c] '''+''' 1.0 L-Serine[c] '''<=>''' 1.0 H2O H2O[c] '''+''' 1.0 Glycine[c] '''+''' 1.0 5,10-Methylenetetrahydrofolate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0109650]]
+
* [[B471_RS0101930]]
 
** [[pantograph]]-[[cljungdahlii]]
 
** [[pantograph]]-[[cljungdahlii]]
 +
** [[pantograph]]-[[bsubtilis]]
 +
** [[pantograph]]-[[aferrooxidans]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01212]]: [http://www.genome.jp/dbget-bin/www_bget?map01212 map01212]
+
* [[map00630]]: [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630]
−
** '''43''' reactions found over '''182''' reactions in the full pathway
+
** '''23''' reactions found over '''129''' reactions in the full pathway
−
* [[map00061]]: [http://www.genome.jp/dbget-bin/www_bget?map00061 map00061]
+
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
−
** '''54''' reactions found over '''160''' reactions in the full pathway
+
** '''212''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''101''' reactions found over '''715''' reactions in the full pathway
 +
* [[map00460]]: [http://www.genome.jp/dbget-bin/www_bget?map00460 map00460]
 +
** '''1''' reactions found over '''14''' reactions in the full pathway
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''51''' reactions found over '''220''' reactions in the full pathway
 +
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 +
** '''78''' reactions found over '''228''' reactions in the full pathway
 +
* [[map00680]]: [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680]
 +
** '''14''' reactions found over '''75''' reactions in the full pathway
 +
* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
 +
** '''24''' reactions found over '''133''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''148''' reactions found over '''694''' reactions in the full pathway
 +
* [[map00670]]: [http://www.genome.jp/dbget-bin/www_bget?map00670 map00670]
 +
** '''13''' reactions found over '''65''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-cljungdahlii]]
−
*** [[cljungdahlii]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-aferrooxidans]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR94957
+
* RHEA:
−
* EC Number : 2.3.1.86
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15481 15481]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* MetaNetX (MNX) Equation : MNXR100142
−
{{#set: common name=3-oxoacyl-[acyl-carrier-protein] synthase (n-C14:0)}}
+
* KEGG Reaction : R00945
−
{{#set: gene associated=B471_RS0109650}}
+
* EC Number : 2.1.2.1
−
{{#set: in pathway=map01100|map01212|map00061}}
+
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=Glycine hydroxymethyltransferase, reversible}}
 +
{{#set: gene associated=B471_RS0101930}}
 +
{{#set: in pathway=map01100|map00630|map01110|map01120|map00460|map01200|map01230|map00680|map00260|map01130|map00670}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis|orthology-aferrooxidans}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=cljungdahlii}}
 

Revision as of 23:41, 20 March 2018

Reaction GHMT2r

  • direction:
    • REVERSIBLE
  • common name:
    • Glycine hydroxymethyltransferase, reversible
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 5,6,7,8-Tetrahydrofolate[c] + 1.0 L-Serine[c] <=> 1.0 H2O H2O[c] + 1.0 Glycine[c] + 1.0 5,10-Methylenetetrahydrofolate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • MetaNetX (MNX) Equation : MNXR100142
  • KEGG Reaction : R00945
  • EC Number : 2.1.2.1




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