Difference between revisions of "GLUR"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PRAGSr_CUT PRAGSr_CUT] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * Wit...")
 
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00780 map00780] == * common_name: ** Biotin metabolism * Synonym(s): == Reaction(s) found == '''2...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/PRAGSr_CUT PRAGSr_CUT] ==
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00780 map00780] ==
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* direction:
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* common_name:
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** LEFT-TO-RIGHT
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** Biotin metabolism
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''28''' reactions found over '''67''' reactions in the full pathway
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** 1.0 [[atp]][c] '''+''' 1.0 [[gly]][c] '''+''' 1.0 [[pram]][c] '''=>''' 1.0 [[adp]][c] '''+''' 1.0 [[pi]][c] '''+''' 1.0 [[gar]][c] '''+''' 1.0 [[h]][c]
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* [[3HAD100]]
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* With common name(s):
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** 0 associated gene:
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** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 Glycine[c] '''+''' 1.0 5-Phospho-beta-D-ribosylamine[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 Phosphate[c] '''+''' 1.0 N1-(5-Phospho-D-ribosyl)glycinamide[c] '''+''' 1.0 H+[c]
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** 1 reconstruction source(s) associated:
−
 
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*** [[manual-reaction_to_add_delete]]
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== Genes associated with this reaction  ==
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* [[3HAD120]]
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Genes have been associated with this reaction based on different elements listed below.
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** 0 associated gene:
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* [[B471_RS0105240]]
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** 1 reconstruction source(s) associated:
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** MANUAL
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*** [[manual-reaction_to_add_delete]]
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== Pathways  ==
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* [[3HAD140]]
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== Reconstruction information  ==
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** 0 associated gene:
−
* [[manual]]:
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** 1 reconstruction source(s) associated:
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** [[reaction found from orthology but we fixed reversibility based on biological expertise]]
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*** [[manual-reaction_to_add_delete]]
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* [[3HAD160]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
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*** [[manual-reaction_to_add_delete]]
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* [[3HAD60]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
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* [[3HAD80]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
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* [[3OAR121]]
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** 1 associated gene(s):
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*** [[B471_RS0109640]]
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** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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* [[3OAR141]]
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** 1 associated gene(s):
 +
*** [[B471_RS0109640]]
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** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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* [[3OAR161]]
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** 1 associated gene(s):
 +
*** [[B471_RS0109640]]
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** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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* [[3OAR180]]
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** 1 associated gene(s):
 +
*** [[B471_RS0109640]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[3OAR181]]
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** 1 associated gene(s):
 +
*** [[B471_RS0109640]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[3OAR40]]
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** 1 associated gene(s):
 +
*** [[B471_RS0109640]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[3OAS121]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0109650]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[3OAS141]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0109650]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[3OAS161]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0109650]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[3OAS180]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0109650]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[3OAS181]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0109650]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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* [[AMAOTr]]
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** 1 associated gene(s):
 +
*** [[B471_RS0107920]]
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** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[AOXSr2]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
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* [[BACCL]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
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* [[BTS4]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-reaction_to_add_delete]]
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* [[CHCOAL]]
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** 1 associated gene(s):
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*** [[B471_RS22405]]
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** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
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* [[DBTS]]
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** 1 associated gene(s):
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*** [[B471_RS21545]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[EAR121y]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
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* [[EAR141y]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
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* [[EAR161y]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
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* [[EAR180y]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
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* [[EAR181y]]
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** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/3HAD100_1 3HAD100_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/3HAD120_1 3HAD120_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/3HAD140_1 3HAD140_1]
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* [http://bigg.ucsd.edu/universal/reactions/3HAD160_1 3HAD160_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/3HAD40_1 3HAD40_1]
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* [http://bigg.ucsd.edu/universal/reactions/3HAD60_1 3HAD60_1]
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* [http://bigg.ucsd.edu/universal/reactions/3HAD80_1 3HAD80_1]
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* [http://bigg.ucsd.edu/universal/reactions/3OAR180_1 3OAR180_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/3OAR181_1 3OAR181_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/3OAS180_1 3OAS180_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/3OAS181_1 3OAS181_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/AOXSr AOXSr]
 +
* [http://bigg.ucsd.edu/universal/reactions/BACCLm BACCLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/BSORy BSORy]
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* [http://bigg.ucsd.edu/universal/reactions/BTND1 BTND1]
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* [http://bigg.ucsd.edu/universal/reactions/BTND1n BTND1n]
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* [http://bigg.ucsd.edu/universal/reactions/BTNDe BTNDe]
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* [http://bigg.ucsd.edu/universal/reactions/BTNDm BTNDm]
 +
* [http://bigg.ucsd.edu/universal/reactions/BTS3r BTS3r]
 +
* [http://bigg.ucsd.edu/universal/reactions/BTSr BTSr]
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* [http://bigg.ucsd.edu/universal/reactions/EAR160y EAR160y]
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* [http://bigg.ucsd.edu/universal/reactions/EAR160y_1 EAR160y_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/EAR181y_1 EAR181y_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/EGMEACPR EGMEACPR]
 +
* [http://bigg.ucsd.edu/universal/reactions/EPMEACPR EPMEACPR]
 +
* [http://bigg.ucsd.edu/universal/reactions/KAS1 KAS1]
 +
* [http://bigg.ucsd.edu/universal/reactions/KAS10 KAS10]
 +
* [http://bigg.ucsd.edu/universal/reactions/KAS11 KAS11]
 +
* [http://bigg.ucsd.edu/universal/reactions/KAS12 KAS12]
 +
* [http://bigg.ucsd.edu/universal/reactions/KAS13 KAS13]
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* [http://bigg.ucsd.edu/universal/reactions/KAS2 KAS2]
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* [http://bigg.ucsd.edu/universal/reactions/KAS3 KAS3]
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* [http://bigg.ucsd.edu/universal/reactions/KAS4 KAS4]
 +
* [http://bigg.ucsd.edu/universal/reactions/KAS5 KAS5]
 +
* [http://bigg.ucsd.edu/universal/reactions/KAS6 KAS6]
 +
* [http://bigg.ucsd.edu/universal/reactions/KAS9 KAS9]
 +
* [http://bigg.ucsd.edu/universal/reactions/OGMEACPD OGMEACPD]
 +
* [http://bigg.ucsd.edu/universal/reactions/OPMEACPD OPMEACPD]
 +
* [http://bigg.ucsd.edu/universal/reactions/PMEACPE PMEACPE]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common_name=Biotin metabolism}}
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{{#set: gene associated=B471_RS0105240}}
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{{#set: reaction found=28}}
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{{#set: in pathway=}}
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{{#set: total reaction=67}}
−
{{#set: reconstruction category=manual}}
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{{#set: completion rate=42.0}}
−
{{#set: reconstruction source=reaction found from orthology but we fixed reversibility based on biological expertise}}
+

Revision as of 23:49, 20 March 2018

Pathway map00780

  • common_name:
    • Biotin metabolism
  • Synonym(s):

Reaction(s) found

28 reactions found over 67 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=GLUR&oldid=4312"