Difference between revisions of "Map00250"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CSNt2 CSNt2] == * direction: ** LEFT-TO-RIGHT * common name: ** Cytosine transport in via proton sy...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250] == * common_name: ** Alanine, aspartate and glutamate metabolism * Synonym(s): ==...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/CSNt2 CSNt2] ==
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250] ==
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* direction:
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* common_name:
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** LEFT-TO-RIGHT
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** Alanine, aspartate and glutamate metabolism
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* common name:
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** Cytosine transport in via proton symport
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''22''' reactions found over '''93''' reactions in the full pathway
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** 1.0 [[h]][e] '''+''' 1.0 [[csn]][e] '''=>''' 1.0 [[csn]][c] '''+''' 1.0 [[h]][c]
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* [[ABTA]]
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* With common name(s):
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** 1 associated gene(s):
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** 1.0 H+[e] '''+''' 1.0 Cytosine[e] '''=>''' 1.0 Cytosine[c] '''+''' 1.0 H+[c]
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*** [[B471_RS0110025]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-cljungdahlii]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-bsubtilis]]
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* [[B471_RS0115965]]
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* [[ADSS]]
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** [[pantograph]]-[[cljungdahlii]]
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** 1 associated gene(s):
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* [[B471_RS22545]]
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*** [[B471_RS0112090]]
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** [[pantograph]]-[[cljungdahlii]]
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** 3 reconstruction source(s) associated:
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* [[B471_RS0107255]]
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*** [[orthology-cljungdahlii]]
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** [[pantograph]]-[[cljungdahlii]]
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*** [[orthology-bsubtilis]]
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* [[B471_RS0108370]]
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*** [[orthology-aferrooxidans]]
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** [[pantograph]]-[[cljungdahlii]]
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* [[ALAD_L]]
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* [[B471_RS0103450]]
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** 1 associated gene(s):
−
** [[pantograph]]-[[cljungdahlii]]
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*** [[B471_RS0101190]]
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** [[pantograph]]-[[bsubtilis]]
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** 1 reconstruction source(s) associated:
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* [[B471_RS0115285]]
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*** [[orthology-bsubtilis]]
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** [[pantograph]]-[[cljungdahlii]]
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* [[ARGSL]]
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* [[B471_RS0112535]]
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** 1 associated gene(s):
−
** [[pantograph]]-[[cljungdahlii]]
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*** [[B471_RS23380]]
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* [[B471_RS0108080]]
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** 3 reconstruction source(s) associated:
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** [[pantograph]]-[[cljungdahlii]]
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*** [[orthology-cljungdahlii]]
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* [[B471_RS0116835]]
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*** [[orthology-bsubtilis]]
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** [[pantograph]]-[[cljungdahlii]]
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*** [[orthology-aferrooxidans]]
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== Pathways  ==
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* [[ARGSS]]
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== Reconstruction information  ==
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** 1 associated gene(s):
−
* Category: [[orthology]]
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*** [[B471_RS0117525]]
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** Source: [[orthology-cljungdahlii]]
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** 3 reconstruction source(s) associated:
−
*** Tool: [[pantograph]]
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*** [[orthology-cljungdahlii]]
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** Source: [[orthology-bsubtilis]]
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*** [[orthology-bsubtilis]]
−
*** Tool: [[pantograph]]
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*** [[orthology-aferrooxidans]]
 +
* [[ASNS1]]
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** 3 associated gene(s):
 +
*** [[B471_RS0118130]]
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*** [[B471_RS23595]]
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*** [[B471_RS22220]]
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** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[ASP1DC]]
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** 1 associated gene(s):
 +
*** [[B471_RS0116125]]
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** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[ASP4DC]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
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* [[ASPCT]]
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** 1 associated gene(s):
 +
*** [[B471_RS0109090]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
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* [[ASPO1]]
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** 1 associated gene(s):
 +
*** [[B471_RS23075]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
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* [[ASPO6]]
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** 1 associated gene(s):
 +
*** [[B471_RS23075]]
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** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
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* [[ASPR]]
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** 1 associated gene(s):
 +
*** [[B471_RS0113020]]
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** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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* [[ASPT]]
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** 1 associated gene(s):
 +
*** [[B471_RS0102435]]
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** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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* [[ASPTA]]
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** 1 associated gene(s):
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*** [[B471_RS0109180]]
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** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[CBPS]]
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** 2 associated gene(s):
 +
*** [[B471_RS0109105]]
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*** [[B471_RS0109100]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[GF6PTA]]
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** 1 associated gene(s):
 +
*** [[B471_RS0105605]]
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** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
 +
* [[GLNS]]
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** 4 associated gene(s):
 +
*** [[B471_RS0118305]]
 +
*** [[B471_RS0113160]]
 +
*** [[B471_RS0117560]]
 +
*** [[B471_RS0113155]]
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** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[GLUDy]]
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** 1 associated gene(s):
 +
*** [[B471_RS0108910]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
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* [[GLUPRT]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0105260]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[GLUSy]]
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** 4 associated gene(s):
 +
*** [[B471_RS0109970]]
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*** [[B471_RS0105685]]
 +
*** [[B471_RS0115910]]
 +
*** [[B471_RS0103585]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[P5CD]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0100095]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[SSALx]]
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** 1 associated gene(s):
 +
*** [[B471_RS0100390]]
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** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/3SALATAi 3SALATAi]
 +
* [http://bigg.ucsd.edu/universal/reactions/3SALATAim 3SALATAim]
 +
* [http://bigg.ucsd.edu/universal/reactions/4HGLSD 4HGLSD]
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* [http://bigg.ucsd.edu/universal/reactions/4HGLSDm 4HGLSDm]
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* [http://bigg.ucsd.edu/universal/reactions/AATC AATC]
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* [http://bigg.ucsd.edu/universal/reactions/AATG AATG]
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* [http://bigg.ucsd.edu/universal/reactions/AATGm AATGm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ABTArm ABTArm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ADSL1r ADSL1r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ADSL2r ADSL2r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ADSSh ADSSh]
 +
* [http://bigg.ucsd.edu/universal/reactions/AGTi AGTi]
 +
* [http://bigg.ucsd.edu/universal/reactions/AGTim AGTim]
 +
* [http://bigg.ucsd.edu/universal/reactions/AGTix AGTix]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALATA_L ALATA_L]
 +
* [http://bigg.ucsd.edu/universal/reactions/ALATA_Lm ALATA_Lm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ARGDh ARGDh]
 +
* [http://bigg.ucsd.edu/universal/reactions/ARGSS_1 ARGSS_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASNN ASNN]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASNNe ASNNe]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASNNm ASNNm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASNNpp ASNNpp]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASNS2 ASNS2]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPATh ASPATh]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPCT_1 ASPCT_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPCTm ASPCTm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPCTn ASPCTn]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPNATm ASPNATm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPO6_1 ASPO6_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPOcm ASPOcm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPOm ASPOm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPSE ASPSE]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPTA6 ASPTA6]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPTAm ASPTAm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ASPTAp ASPTAp]
 +
* [http://bigg.ucsd.edu/universal/reactions/CBPSam CBPSam]
 +
* [http://bigg.ucsd.edu/universal/reactions/CBPSn CBPSn]
 +
* [http://bigg.ucsd.edu/universal/reactions/CPS CPS]
 +
* [http://bigg.ucsd.edu/universal/reactions/CYSSADS CYSSADS]
 +
* [http://bigg.ucsd.edu/universal/reactions/DASPO1p DASPO1p]
 +
* [http://bigg.ucsd.edu/universal/reactions/GALh GALh]
 +
* [http://bigg.ucsd.edu/universal/reactions/GALm GALm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GAM GAM]
 +
* [http://bigg.ucsd.edu/universal/reactions/GDH GDH]
 +
* [http://bigg.ucsd.edu/universal/reactions/GDH1 GDH1]
 +
* [http://bigg.ucsd.edu/universal/reactions/GDH_nadp GDH_nadp]
 +
* [http://bigg.ucsd.edu/universal/reactions/GF6PTA_1 GF6PTA_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLNSP1 GLNSP1]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLNSP2 GLNSP2]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLNSP3 GLNSP3]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUDC GLUDC]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUDxi GLUDxi]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUDym GLUDym]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUN GLUN]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUNm GLUNm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUNpp GLUNpp]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUS GLUS]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUS_nadph GLUS_nadph]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLUSx GLUSx]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYTA GLYTA]
 +
* [http://bigg.ucsd.edu/universal/reactions/GLYTA_1 GLYTA_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HCGALm HCGALm]
 +
* [http://bigg.ucsd.edu/universal/reactions/LCYSTAT LCYSTAT]
 +
* [http://bigg.ucsd.edu/universal/reactions/LCYSTATm LCYSTATm]
 +
* [http://bigg.ucsd.edu/universal/reactions/NACASPAH NACASPAH]
 +
* [http://bigg.ucsd.edu/universal/reactions/P5CDm P5CDm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PRDPARh PRDPARh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PUTA3 PUTA3]
 +
* [http://bigg.ucsd.edu/universal/reactions/SSALxm SSALxm]
 +
* [http://bigg.ucsd.edu/universal/reactions/SSALy SSALy]
 +
* [http://bigg.ucsd.edu/universal/reactions/SSNOh SSNOh]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: common_name=Alanine, aspartate and glutamate metabolism}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29935 29935]
+
{{#set: reaction found=22}}
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* MetaNetX (MNX) Equation : MNXR96929
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{{#set: total reaction=93}}
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* BioCyc : META:TRANS-RXN-116
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{{#set: completion rate=24.0}}
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{{#set: direction=LEFT-TO-RIGHT}}
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−
{{#set: common name=Cytosine transport in via proton symport}}
+
−
{{#set: gene associated=B471_RS0115965|B471_RS22545|B471_RS0107255|B471_RS0108370|B471_RS0103450|B471_RS0115285|B471_RS0112535|B471_RS0108080|B471_RS0116835}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis}}
+
−
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 15:16, 21 March 2018

Pathway map00250

  • common_name:
    • Alanine, aspartate and glutamate metabolism
  • Synonym(s):

Reaction(s) found

22 reactions found over 93 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=Map00250&oldid=6498"