Difference between revisions of "DAPE"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MDDCP1ex MDDCP1ex] == * direction: ** LEFT-TO-RIGHT * common name: ** Murein D,D-carboxypeptidase (...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DAPE DAPE] == * direction: ** REVERSIBLE * common name: ** Diaminopimelate epimerase * Synonym(s):...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/MDDCP1ex MDDCP1ex] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/DAPE DAPE] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Murein D,D-carboxypeptidase (murein5px4p) (periplasm)
+
** Diaminopimelate epimerase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[murein5px4p]][e] '''+''' 1.0 [[h2o]][e] '''=>''' 1.0 [[murein4px4p]][e] '''+''' 1.0 [[ala__D]][e]
+
** 1.0 [[26dap_LL]][c] '''<=>''' 1.0 [[26dap__M]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Two disacharide linked murein units, pentapeptide crosslinked tetrapeptide (A2pm->D-ala) (middle of chain)[e] '''+''' 1.0 H2O H2O[e] '''=>''' 1.0 Two disacharide linked murein units, tetrapeptide corsslinked tetrapeptide (A2pm->D-ala) (middle of chain)[e] '''+''' 1.0 D-Alanine[e]
+
** 1.0 LL-2,6-Diaminoheptanedioate[c] '''<=>''' 1.0 Meso-2,6-Diaminoheptanedioate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0101180]]
+
* Gene: [[B471_RS0109300]]
−
** [[pantograph]]-[[cljungdahlii]]
+
** Source: [[orthology-cljungdahlii]]
 +
** Source: [[orthology-bsubtilis]]
 +
** Source: [[orthology-aferrooxidans]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00550]]: [http://www.genome.jp/dbget-bin/www_bget?map00550 map00550]
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''14''' reactions found over '''27''' reactions in the full pathway
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''212''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00300]]: [http://www.genome.jp/dbget-bin/www_bget?map00300 map00300]
 +
** '''10''' reactions found over '''34''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''101''' reactions found over '''715''' reactions in the full pathway
 +
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 +
** '''78''' reactions found over '''228''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''148''' reactions found over '''694''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-cljungdahlii]]
 
** Source: [[orthology-cljungdahlii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-aferrooxidans]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR101429
+
* RHEA:
−
* EC Number : 3.4.16.4
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15393 15393]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* EC Number : 5.1.1.7
−
{{#set: common name=Murein D,D-carboxypeptidase (murein5px4p) (periplasm)}}
+
* MetaNetX (MNX) Equation : MNXR97143
−
{{#set: gene associated=B471_RS0101180}}
+
* KEGG Reaction : R02735
−
{{#set: in pathway=map00550}}
+
* BioCyc : META:DIAMINOPIMEPIM-RXN
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=Diaminopimelate epimerase}}
 +
{{#set: gene associated=B471_RS0109300}}
 +
{{#set: in pathway=map01100|map01110|map00300|map01120|map01230|map01130}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=orthology-cljungdahlii}}
+
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis|orthology-aferrooxidans}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:36, 21 March 2018

Reaction DAPE

  • direction:
    • REVERSIBLE
  • common name:
    • Diaminopimelate epimerase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 LL-2,6-Diaminoheptanedioate[c] <=> 1.0 Meso-2,6-Diaminoheptanedioate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 5.1.1.7
  • MetaNetX (MNX) Equation : MNXR97143
  • KEGG Reaction : R02735
  • BioCyc : META:DIAMINOPIMEPIM-RXN




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