Difference between revisions of "EAR80y CUT"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TDPGDH TDPGDH] == * direction: ** LEFT-TO-RIGHT * common name: ** DTDPglucose 4,6-dehydratase * Syn...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/EAR80y_CUT EAR80y_CUT] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * With i...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/TDPGDH TDPGDH] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/EAR80y_CUT EAR80y_CUT] ==
 
* direction:
 
* direction:
** LEFT-TO-RIGHT
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** REVERSIBLE
* common name:
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** DTDPglucose 4,6-dehydratase
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* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[dtdpglu]][c] '''=>''' 1.0 [[dtdp4d6dg]][c] '''+''' 1.0 [[h2o]][c]
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** 1.0 [[toct2eACP]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[nadph]][c] '''<=>''' 1.0 [[nadp]][c] '''+''' 1.0 [[ocACP]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 DTDPglucose[c] '''=>''' 1.0 DTDP-4-dehydro-6-deoxy-D-glucose[c] '''+''' 1.0 H2O H2O[c]
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** 1.0 Trans-Oct-2-enoyl-[acyl-carrier protein][c] '''+''' 1.0 H+[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''<=>''' 1.0 Nicotinamide adenine dinucleotide phosphate[c] '''+''' 1.0 Octanoyl-ACP (n-C8:0ACP)[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[B471_RS0104495]]
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* Gene: [[B471_RS0108775]]
** [[pantograph]]-[[cljungdahlii]]
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** Source: [[manual-missing_rxn_creator]]
** [[pantograph]]-[[aferrooxidans]]
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== Pathways  ==
 
== Pathways  ==
* [[map00521]]: [http://www.genome.jp/dbget-bin/www_bget?map00521 map00521]
 
** '''8''' reactions found over '''14''' reactions in the full pathway
 
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 
** '''148''' reactions found over '''694''' reactions in the full pathway
 
* [[map00523]]: [http://www.genome.jp/dbget-bin/www_bget?map00523 map00523]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
* [[map00525]]: [http://www.genome.jp/dbget-bin/www_bget?map00525 map00525]
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
* [[map01055]]: [http://www.genome.jp/dbget-bin/www_bget?map01055 map01055]
 
** '''1''' reactions found over '''1''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* Category: [[orthology]]
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* Category: [[manual]]
** Source: [[orthology-cljungdahlii]]
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** Source: [[manual-missing_rxn_creator]]
*** Tool: [[pantograph]]
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*** Comment: [[reaction found from orthology but we fixed reversibility based on biological expertise]]
** Source: [[orthology-aferrooxidans]]
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*** Tool: [[pantograph]]
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== External links  ==
 
== External links  ==
* RHEA:
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{{#set: direction=REVERSIBLE}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17221 17221]
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{{#set: gene associated=B471_RS0108775}}
* EC Number : 4.2.1.46
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{{#set: in pathway=}}
* MetaNetX (MNX) Equation : MNXR104761
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{{#set: reconstruction category=manual}}
* KEGG Reaction : R06513
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{{#set: reconstruction source=manual-missing_rxn_creator}}
* BioCyc : META:DTDPGLUCDEHYDRAT-RXN
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{{#set: reconstruction comment=reaction found from orthology but we fixed reversibility based on biological expertise}}
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=DTDPglucose 4,6-dehydratase}}
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{{#set: gene associated=B471_RS0104495}}
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{{#set: in pathway=map00521|map01130|map00523|map00525|map01055}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-cljungdahlii|orthology-aferrooxidans}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 16:36, 21 March 2018

Reaction EAR80y_CUT

  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Trans-Oct-2-enoyl-[acyl-carrier protein][c] + 1.0 H+[c] + 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] <=> 1.0 Nicotinamide adenine dinucleotide phosphate[c] + 1.0 Octanoyl-ACP (n-C8:0ACP)[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links