Difference between revisions of "GSNt2 CUT"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00910 map00910] == * common_name: ** Nitrogen metabolism * Synonym(s): == Reaction(s) found == ''...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GSNt2_CUT GSNt2_CUT] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * With ide...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00910 map00910] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/GSNt2_CUT GSNt2_CUT] ==
* common_name:
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* direction:
** Nitrogen metabolism
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** REVERSIBLE
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction(s) found ==
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== Reaction Formula ==
'''5''' reactions found over '''36''' reactions in the full pathway
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* With identifiers:
* [[GLNS]]
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** 1.0 [[gsn]][e] '''+''' 1.0 [[h]][e] '''<=>''' 1.0 [[h]][c] '''+''' 1.0 [[gsn]][c]
** 4 associated gene(s):
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* With common name(s):
*** [[B471_RS0118305]]
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** 1.0 Guanosine[e] '''+''' 1.0 H+[e] '''<=>''' 1.0 H+[c] '''+''' 1.0 Guanosine[c]
*** [[B471_RS0113160]]
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*** [[B471_RS0117560]]
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== Genes associated with this reaction  ==
*** [[B471_RS0113155]]
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Genes have been associated with this reaction based on different elements listed below.
** 3 reconstruction source(s) associated:
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* Gene: [[B471_RS0103450]]
*** [[orthology-cljungdahlii]]
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** Source: [[manual-missing_rxn_creator]]
*** [[orthology-bsubtilis]]
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== Pathways  ==
*** [[orthology-aferrooxidans]]
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== Reconstruction information  ==
* [[GLUDy]]
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* Category: [[manual]]
** 1 associated gene(s):
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** Source: [[manual-missing_rxn_creator]]
*** [[B471_RS0108910]]
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*** Comment: [[reaction found from orthology but we fixed reversibility based on biological expertise]]
** 1 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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* [[GLUSy]]
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** 4 associated gene(s):
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*** [[B471_RS0109970]]
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*** [[B471_RS0105685]]
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*** [[B471_RS0115910]]
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*** [[B471_RS0103585]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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*** [[manual-reaction_to_add_delete]]
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* [[HCO3E]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-reaction_to_add_delete]]
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* [[NTRIR2x]]
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** 2 associated gene(s):
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*** [[B471_RS0101640]]
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*** [[B471_RS0102015]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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== Reaction(s) not found ==
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* [http://bigg.ucsd.edu/universal/reactions/CBMD CBMD]
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* [http://bigg.ucsd.edu/universal/reactions/CBMKr CBMKr]
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* [http://bigg.ucsd.edu/universal/reactions/CPS CPS]
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* [http://bigg.ucsd.edu/universal/reactions/FORA FORA]
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* [http://bigg.ucsd.edu/universal/reactions/FORAMD FORAMD]
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* [http://bigg.ucsd.edu/universal/reactions/FORAMDx FORAMDx]
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* [http://bigg.ucsd.edu/universal/reactions/GALh GALh]
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* [http://bigg.ucsd.edu/universal/reactions/GALm GALm]
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* [http://bigg.ucsd.edu/universal/reactions/GDH GDH]
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* [http://bigg.ucsd.edu/universal/reactions/GDH1 GDH1]
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* [http://bigg.ucsd.edu/universal/reactions/GDH_nadp GDH_nadp]
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* [http://bigg.ucsd.edu/universal/reactions/GLNSP1 GLNSP1]
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* [http://bigg.ucsd.edu/universal/reactions/GLNSP2 GLNSP2]
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* [http://bigg.ucsd.edu/universal/reactions/GLNSP3 GLNSP3]
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* [http://bigg.ucsd.edu/universal/reactions/GLUDxi GLUDxi]
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* [http://bigg.ucsd.edu/universal/reactions/GLUDym GLUDym]
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* [http://bigg.ucsd.edu/universal/reactions/GLUS GLUS]
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* [http://bigg.ucsd.edu/universal/reactions/GLUS_nadph GLUS_nadph]
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* [http://bigg.ucsd.edu/universal/reactions/GLUSx GLUSx]
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* [http://bigg.ucsd.edu/universal/reactions/HAMR HAMR]
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* [http://bigg.ucsd.edu/universal/reactions/HCO3Ehi HCO3Ehi]
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* [http://bigg.ucsd.edu/universal/reactions/HCO3Em HCO3Em]
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* [http://bigg.ucsd.edu/universal/reactions/HCO3En HCO3En]
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* [http://bigg.ucsd.edu/universal/reactions/NHFRBO NHFRBO]
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* [http://bigg.ucsd.edu/universal/reactions/NITR NITR]
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* [http://bigg.ucsd.edu/universal/reactions/NO3R2bpp NO3R2bpp]
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* [http://bigg.ucsd.edu/universal/reactions/NTRIR2y NTRIR2y]
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* [http://bigg.ucsd.edu/universal/reactions/NTRIRy NTRIRy]
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* [http://bigg.ucsd.edu/universal/reactions/NTRLASE NTRLASE]
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* [http://bigg.ucsd.edu/universal/reactions/NTRLASE2 NTRLASE2]
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* [http://bigg.ucsd.edu/universal/reactions/NTRLASE3 NTRLASE3]
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== External links  ==
 
== External links  ==
{{#set: common_name=Nitrogen metabolism}}
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{{#set: direction=REVERSIBLE}}
{{#set: reaction found=5}}
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{{#set: gene associated=B471_RS0103450}}
{{#set: total reaction=36}}
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{{#set: in pathway=}}
{{#set: completion rate=14.0}}
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{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=manual-missing_rxn_creator}}
 +
{{#set: reconstruction comment=reaction found from orthology but we fixed reversibility based on biological expertise}}

Latest revision as of 16:37, 21 March 2018

Reaction GSNt2_CUT

  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

  • With identifiers:
    • 1.0 gsn[e] + 1.0 h[e] <=> 1.0 h[c] + 1.0 gsn[c]
  • With common name(s):
    • 1.0 Guanosine[e] + 1.0 H+[e] <=> 1.0 H+[c] + 1.0 Guanosine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links