Difference between revisions of "ACONTa"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00040 map00040] == * common_name: ** Pentose and glucuronate interconversions * Synonym(s): == Rea...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ACONTa ACONTa] == * direction: ** REVERSIBLE * common name: ** Aconitase (half-reaction A, Citrate...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00040 map00040] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/ACONTa ACONTa] ==
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* common_name:
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* direction:
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** Pentose and glucuronate interconversions
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** REVERSIBLE
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* common name:
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** Aconitase (half-reaction A, Citrate hydro-lyase)
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''6''' reactions found over '''54''' reactions in the full pathway
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* With identifiers:
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* [[GALUi]]
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** 1.0 [[cit]][c] '''<=>''' 1.0 [[h2o]][c] '''+''' 1.0 [[acon_C]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[B471_RS0107615]]
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** 1.0 Citrate[c] '''<=>''' 1.0 H2O H2O[c] '''+''' 1.0 Cis-Aconitate[c]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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== Genes associated with this reaction  ==
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*** [[orthology-bsubtilis]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-aferrooxidans]]
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* Gene: [[B471_RS0105965]]
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* [[RBP4E]]
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** Source: [[orthology-cljungdahlii]]
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** 1 associated gene(s):
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** Source: [[orthology-aferrooxidans]]
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*** [[B471_RS0112070]]
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== Pathways  ==
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** 2 reconstruction source(s) associated:
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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*** [[orthology-cljungdahlii]]
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** '''471''' reactions found over '''2349''' reactions in the full pathway
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*** [[orthology-bsubtilis]]
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* [[map00630]]: [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630]
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* [[RPE]]
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** '''23''' reactions found over '''129''' reactions in the full pathway
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** 1 associated gene(s):
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* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
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*** [[B471_RS23765]]
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** '''212''' reactions found over '''1054''' reactions in the full pathway
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** 3 reconstruction source(s) associated:
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* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
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*** [[orthology-cljungdahlii]]
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** '''101''' reactions found over '''715''' reactions in the full pathway
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*** [[orthology-bsubtilis]]
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* [[map01210]]: [http://www.genome.jp/dbget-bin/www_bget?map01210 map01210]
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*** [[orthology-aferrooxidans]]
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** '''26''' reactions found over '''80''' reactions in the full pathway
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* [[SBTD_D2]]
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* [[map00720]]: [http://www.genome.jp/dbget-bin/www_bget?map00720 map00720]
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** 2 associated gene(s):
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** '''25''' reactions found over '''157''' reactions in the full pathway
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*** [[B471_RS0106740]]
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* [[map00020]]: [http://www.genome.jp/dbget-bin/www_bget?map00020 map00020]
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*** [[B471_RS0115645]]
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** '''10''' reactions found over '''70''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
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*** [[orthology-bsubtilis]]
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** '''148''' reactions found over '''694''' reactions in the full pathway
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* [[UDPGD]]
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== Reconstruction information  ==
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** 2 associated gene(s):
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* Category: [[orthology]]
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*** [[B471_RS0114430]]
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** Source: [[orthology-cljungdahlii]]
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*** [[B471_RS0114260]]
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*** Tool: [[pantograph]]
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** 3 reconstruction source(s) associated:
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** Source: [[orthology-aferrooxidans]]
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*** [[orthology-cljungdahlii]]
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*** Tool: [[pantograph]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[XYLK]]
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** 2 associated gene(s):
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*** [[B471_RS0113565]]
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*** [[B471_RS0101525]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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== Reaction(s) not found ==
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* [http://bigg.ucsd.edu/universal/reactions/3KGK 3KGK]
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* [http://bigg.ucsd.edu/universal/reactions/ABTD ABTD]
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* [http://bigg.ucsd.edu/universal/reactions/ABTDG ABTDG]
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* [http://bigg.ucsd.edu/universal/reactions/ALCD22_L ALCD22_L]
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* [http://bigg.ucsd.edu/universal/reactions/ALTRH ALTRH]
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* [http://bigg.ucsd.edu/universal/reactions/ARABR ARABR]
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* [http://bigg.ucsd.edu/universal/reactions/ARAI ARAI]
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* [http://bigg.ucsd.edu/universal/reactions/BILIRBU BILIRBU]
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* [http://bigg.ucsd.edu/universal/reactions/DGC3D DGC3D]
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* [http://bigg.ucsd.edu/universal/reactions/DGULND DGULND]
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* [http://bigg.ucsd.edu/universal/reactions/DOGULND1 DOGULND1]
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* [http://bigg.ucsd.edu/universal/reactions/DOGULND2 DOGULND2]
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* [http://bigg.ucsd.edu/universal/reactions/DOGULNR DOGULNR]
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* [http://bigg.ucsd.edu/universal/reactions/FBA4 FBA4]
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* [http://bigg.ucsd.edu/universal/reactions/GALOR GALOR]
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* [http://bigg.ucsd.edu/universal/reactions/GALT GALT]
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* [http://bigg.ucsd.edu/universal/reactions/GUI1 GUI1]
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* [http://bigg.ucsd.edu/universal/reactions/GULN3D GULN3D]
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* [http://bigg.ucsd.edu/universal/reactions/GULND GULND]
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* [http://bigg.ucsd.edu/universal/reactions/GULNDer GULNDer]
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* [http://bigg.ucsd.edu/universal/reactions/GULNLR GULNLR]
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* [http://bigg.ucsd.edu/universal/reactions/KG6PDC KG6PDC]
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* [http://bigg.ucsd.edu/universal/reactions/LYXI LYXI]
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* [http://bigg.ucsd.edu/universal/reactions/MANAO MANAO]
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* [http://bigg.ucsd.edu/universal/reactions/MNNH MNNH]
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* [http://bigg.ucsd.edu/universal/reactions/RBK_L1 RBK_L1]
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* [http://bigg.ucsd.edu/universal/reactions/RBTDG RBTDG]
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* [http://bigg.ucsd.edu/universal/reactions/RMK RMK]
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* [http://bigg.ucsd.edu/universal/reactions/RMPA RMPA]
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* [http://bigg.ucsd.edu/universal/reactions/RPEh RPEh]
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* [http://bigg.ucsd.edu/universal/reactions/SBTD_L SBTD_L]
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* [http://bigg.ucsd.edu/universal/reactions/SBTRh SBTRh]
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* [http://bigg.ucsd.edu/universal/reactions/TAGURr TAGURr]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A10r UGT1A10r]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A1r UGT1A1r]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A3r UGT1A3r]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A4r UGT1A4r]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A5r UGT1A5r]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A6r UGT1A6r]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A7r UGT1A7r]
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* [http://bigg.ucsd.edu/universal/reactions/UGT1A8r UGT1A8r]
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* [http://bigg.ucsd.edu/universal/reactions/X5PL3E X5PL3E]
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* [http://bigg.ucsd.edu/universal/reactions/XYLI1 XYLI1]
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* [http://bigg.ucsd.edu/universal/reactions/XYLI2 XYLI2]
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* [http://bigg.ucsd.edu/universal/reactions/XYLK2 XYLK2]
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* [http://bigg.ucsd.edu/universal/reactions/XYLR XYLR]
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* [http://bigg.ucsd.edu/universal/reactions/XYLTD_D XYLTD_D]
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* [http://bigg.ucsd.edu/universal/reactions/XYLUR XYLUR]
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== External links  ==
 
== External links  ==
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{{#set: common_name=Pentose and glucuronate interconversions}}
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* RHEA:
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{{#set: reaction found=6}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10228 10228]
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{{#set: total reaction=54}}
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* EC Number : 4.2.1.3
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{{#set: completion rate=11.0}}
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* MetaNetX (MNX) Equation : MNXR95386
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* KEGG Reaction : R01325
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* BioCyc : META:ACONITATEDEHYDR-RXN
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=Aconitase (half-reaction A, Citrate hydro-lyase)}}
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{{#set: gene associated=B471_RS0105965}}
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{{#set: in pathway=map01100|map00630|map01110|map01120|map01210|map00720|map00020|map01130}}
 +
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-cljungdahlii|orthology-aferrooxidans}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:38, 21 March 2018

Reaction ACONTa

  • direction:
    • REVERSIBLE
  • common name:
    • Aconitase (half-reaction A, Citrate hydro-lyase)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Citrate[c] <=> 1.0 H2O H2O[c] + 1.0 Cis-Aconitate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 4.2.1.3
  • MetaNetX (MNX) Equation : MNXR95386
  • KEGG Reaction : R01325
  • BioCyc : META:ACONITATEDEHYDR-RXN




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