Difference between revisions of "THRAi CUT"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00860 map00860] == * common_name: ** Porphyrin and chlorophyll metabolism * Synonym(s): == Reactio...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/THRAi_CUT THRAi_CUT] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * With ide...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00860 map00860] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/THRAi_CUT THRAi_CUT] ==
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* common_name:
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* direction:
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** Porphyrin and chlorophyll metabolism
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** REVERSIBLE
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''23''' reactions found over '''106''' reactions in the full pathway
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* With identifiers:
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* [[ACBIPGT]]
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** 1.0 [[thr__L]][c] '''<=>''' 1.0 [[gly]][c] '''+''' 1.0 [[acald]][c]
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** 0 associated gene:
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* With common name(s):
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** 1 reconstruction source(s) associated:
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** 1.0 L-Threonine[c] '''<=>''' 1.0 Glycine[c] '''+''' 1.0 Acetaldehyde[c]
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*** [[manual-reaction_to_add_delete]]
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* [[CPC2MT]]
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== Genes associated with this reaction  ==
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** 0 associated gene:
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Genes have been associated with this reaction based on different elements listed below.
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** 1 reconstruction source(s) associated:
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* Gene: [[B471_RS0102175]]
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*** [[manual-reaction_to_add_delete]]
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** Source: [[manual-missing_rxn_creator]]
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* [[CPC3MT]]
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== Pathways  ==
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** 0 associated gene:
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== Reconstruction information  ==
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** 1 reconstruction source(s) associated:
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* Category: [[manual]]
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*** [[manual-reaction_to_add_delete]]
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** Source: [[manual-missing_rxn_creator]]
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* [[CPC4MT]]
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*** Comment: [[reaction found from orthology but we fixed reversibility based on biological expertise]]
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** 0 associated gene:
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−
** 1 reconstruction source(s) associated:
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−
*** [[manual-reaction_to_add_delete]]
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−
* [[CPC6R]]
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−
** 0 associated gene:
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−
** 1 reconstruction source(s) associated:
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−
*** [[manual-reaction_to_add_delete]]
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−
* [[CPC8MM]]
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−
** 0 associated gene:
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−
** 1 reconstruction source(s) associated:
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−
*** [[manual-reaction_to_add_delete]]
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−
* [[CPPPGO]]
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−
** 1 associated gene(s):
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−
*** [[B471_RS0118845]]
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** 1 reconstruction source(s) associated:
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−
*** [[orthology-bsubtilis]]
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−
* [[G1SAT]]
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−
** 2 associated gene(s):
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*** [[B471_RS0117455]]
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*** [[B471_RS0107485]]
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−
** 2 reconstruction source(s) associated:
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−
*** [[orthology-bsubtilis]]
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−
*** [[orthology-aferrooxidans]]
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−
* [[GLUTRR]]
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** 1 associated gene(s):
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*** [[B471_RS0108690]]
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−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
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−
*** [[orthology-aferrooxidans]]
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−
* [[GLUTRS]]
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−
** 1 associated gene(s):
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−
*** [[B471_RS0110825]]
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−
** 1 reconstruction source(s) associated:
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−
*** [[orthology-bsubtilis]]
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−
* [[GLYAT]]
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−
** 1 associated gene(s):
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−
*** [[B471_RS22400]]
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−
** 1 reconstruction source(s) associated:
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−
*** [[orthology-bsubtilis]]
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−
* [[HEMEOS]]
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−
** 1 associated gene(s):
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*** [[B471_RS0118070]]
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** 1 reconstruction source(s) associated:
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−
*** [[orthology-aferrooxidans]]
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−
* [[LTHRK]]
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−
** 0 associated gene:
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** 1 reconstruction source(s) associated:
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−
*** [[manual-reaction_to_add_delete]]
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−
* [[NNDMBRT]]
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** 0 associated gene:
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−
** 1 reconstruction source(s) associated:
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−
*** [[manual-reaction_to_add_delete]]
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−
* [[PC11M]]
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−
** 1 associated gene(s):
+
−
*** [[B471_RS0105045]]
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−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
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−
* [[PC20M]]
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−
** 1 associated gene(s):
+
−
*** [[B471_RS0105050]]
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−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
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−
* [[PC8XM]]
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−
** 1 associated gene(s):
+
−
*** [[B471_RS0105060]]
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−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
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−
* [[PPBNGS]]
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** 1 associated gene(s):
+
−
*** [[B471_RS0108710]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
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−
* [[PPPGO]]
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−
** 1 associated gene(s):
+
−
*** [[B471_RS23440]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
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−
* [[SHCHD2]]
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−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
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−
* [[UPP3MT]]
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−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
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−
* [[UPP3S]]
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−
** 1 associated gene(s):
+
−
*** [[B471_RS24310]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
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−
*** [[orthology-aferrooxidans]]
+
−
* [[UPPDC1]]
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** 1 associated gene(s):
+
−
*** [[B471_RS0117740]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
== Reaction(s) not found ==
+
−
* [http://bigg.ucsd.edu/universal/reactions/ADCPS1 ADCPS1]
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−
* [http://bigg.ucsd.edu/universal/reactions/ADCPS2 ADCPS2]
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* [http://bigg.ucsd.edu/universal/reactions/ADCYRS ADCYRS]
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−
* [http://bigg.ucsd.edu/universal/reactions/ADOCBIAH ADOCBIAH]
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* [http://bigg.ucsd.edu/universal/reactions/ADOCBIK ADOCBIK]
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−
* [http://bigg.ucsd.edu/universal/reactions/ADOCBLS ADOCBLS]
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−
* [http://bigg.ucsd.edu/universal/reactions/ALASm ALASm]
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−
* [http://bigg.ucsd.edu/universal/reactions/APPLDHr APPLDHr]
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−
* [http://bigg.ucsd.edu/universal/reactions/BILIRBU BILIRBU]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BILIRED BILIRED]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BILIRED_1 BILIRED_1]
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−
* [http://bigg.ucsd.edu/universal/reactions/CBIAT CBIAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CBL2OR CBL2OR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CBLAT CBLAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CBLAT_DELETE CBLAT_DELETE]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CBLATm CBLATm]
+
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* [http://bigg.ucsd.edu/universal/reactions/CHLADMT CHLADMT]
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* [http://bigg.ucsd.edu/universal/reactions/CHLASE CHLASE]
+
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* [http://bigg.ucsd.edu/universal/reactions/CHLASP CHLASP]
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−
* [http://bigg.ucsd.edu/universal/reactions/CHLBSP CHLBSP]
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* [http://bigg.ucsd.edu/universal/reactions/CHLDADMT CHLDADMT]
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−
* [http://bigg.ucsd.edu/universal/reactions/CHPHYS CHPHYS]
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* [http://bigg.ucsd.edu/universal/reactions/COCHL COCHL]
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−
* [http://bigg.ucsd.edu/universal/reactions/CODSCL4MT CODSCL4MT]
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−
* [http://bigg.ucsd.edu/universal/reactions/CODSCL5BMT CODSCL5BMT]
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−
* [http://bigg.ucsd.edu/universal/reactions/CODSCL5DA CODSCL5DA]
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−
* [http://bigg.ucsd.edu/universal/reactions/CODSCL8XI CODSCL8XI]
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−
* [http://bigg.ucsd.edu/universal/reactions/CPPPGO2 CPPPGO2]
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−
* [http://bigg.ucsd.edu/universal/reactions/CPPPGO_1 CPPPGO_1]
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−
* [http://bigg.ucsd.edu/universal/reactions/CYRDAAT CYRDAAT]
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−
* [http://bigg.ucsd.edu/universal/reactions/CYRDAR2 CYRDAR2]
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−
* [http://bigg.ucsd.edu/universal/reactions/DVCHLDR DVCHLDR]
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−
* [http://bigg.ucsd.edu/universal/reactions/DVOCHR DVOCHR]
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−
* [http://bigg.ucsd.edu/universal/reactions/FCLT FCLT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FCLT_1 FCLT_1]
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−
* [http://bigg.ucsd.edu/universal/reactions/FCLTm FCLTm]
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−
* [http://bigg.ucsd.edu/universal/reactions/FERO FERO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FEROpp FEROpp]
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−
* [http://bigg.ucsd.edu/universal/reactions/FEROt FEROt]
+
−
* [http://bigg.ucsd.edu/universal/reactions/G1SAT_1 G1SAT_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLUTRR_1 GLUTRR_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLUTRS_1 GLUTRS_1]
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−
* [http://bigg.ucsd.edu/universal/reactions/GLUTRSm GLUTRSm]
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−
* [http://bigg.ucsd.edu/universal/reactions/GLYATm GLYATm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYATx GLYATx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HEMEOSm HEMEOSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HEMEOSm_1 HEMEOSm_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MPMECY2 MPMECY2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MPML MPML]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MPML_1 MPML_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MPOMC1 MPOMC1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MPOMMM MPOMMM]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MPOMOR MPOMOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MPOMT MPOMT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PC17M PC17M]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PC6AR PC6AR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PC6YM PC6YM]
+
−
* [http://bigg.ucsd.edu/universal/reactions/POR_1 POR_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPBNGS_1 PPBNGS_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPPGO3 PPPGO3]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPPGO_1 PPPGO_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPPGOm PPPGOm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/R05219 R05219]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RZ5PP RZ5PP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SHCHF SHCHF]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SHCHF_1 SHCHF_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TFENFEOR TFENFEOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/THRPDC THRPDC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/UGT1A10r UGT1A10r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/UGT1A1r UGT1A1r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/UGT1A2r UGT1A2r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/UGT1A3r UGT1A3r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/UGT1A4r UGT1A4r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/UGT1A5r UGT1A5r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/UGT1A6r UGT1A6r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/UGT1A7r UGT1A7r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/UGT1A8r UGT1A8r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/UPP1S UPP1S]
+
−
* [http://bigg.ucsd.edu/universal/reactions/UPP3MT_1 UPP3MT_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/UPP3S_1 UPP3S_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/UPPDC1_1 UPPDC1_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/UPPDC2 UPPDC2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/UPPDC2_1 UPPDC2_1]
+
 
== External links  ==
 
== External links  ==
−
{{#set: common_name=Porphyrin and chlorophyll metabolism}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: reaction found=23}}
+
{{#set: gene associated=B471_RS0102175}}
−
{{#set: total reaction=106}}
+
{{#set: in pathway=}}
−
{{#set: completion rate=22.0}}
+
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=manual-missing_rxn_creator}}
 +
{{#set: reconstruction comment=reaction found from orthology but we fixed reversibility based on biological expertise}}

Latest revision as of 15:38, 21 March 2018

Reaction THRAi_CUT

  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 L-Threonine[c] <=> 1.0 Glycine[c] + 1.0 Acetaldehyde[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=THRAi_CUT&oldid=7534"