Difference between revisions of "CYSTS"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00362 map00362] == * common_name: ** Benzoate degradation * Synonym(s): == Reaction(s) found == '...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CYSTS CYSTS] == * direction: ** LEFT-TO-RIGHT * common name: ** Cystathionine beta synthase * Synon...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00362 map00362] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/CYSTS CYSTS] ==
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* common_name:
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* direction:
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** Benzoate degradation
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** LEFT-TO-RIGHT
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* common name:
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** Cystathionine beta synthase
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''10''' reactions found over '''114''' reactions in the full pathway
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* With identifiers:
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* [[ACACT1r]]
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** 1.0 [[ser__L]][c] '''+''' 1.0 [[hcys__L]][c] '''=>''' 1.0 [[h2o]][c] '''+''' 1.0 [[cyst__L]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[B471_RS0105350]]
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** 1.0 L-Serine[c] '''+''' 1.0 L-Homocysteine[c] '''=>''' 1.0 H2O H2O[c] '''+''' 1.0 L-Cystathionine[c]
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** 1 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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== Genes associated with this reaction  ==
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* [[ACACT2r]]
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Genes have been associated with this reaction based on different elements listed below.
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** 2 associated gene(s):
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* Gene: [[B471_RS0108360]]
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*** [[B471_RS0110565]]
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** Source: [[orthology-cljungdahlii]]
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*** [[B471_RS0115615]]
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* Gene: [[B471_RS0104440]]
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** 1 reconstruction source(s) associated:
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** Source: [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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== Pathways  ==
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* [[ACACT3r]]
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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** 2 associated gene(s):
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** '''471''' reactions found over '''2349''' reactions in the full pathway
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*** [[B471_RS0110565]]
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* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
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*** [[B471_RS0115615]]
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** '''148''' reactions found over '''694''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
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*** [[orthology-bsubtilis]]
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** '''78''' reactions found over '''228''' reactions in the full pathway
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* [[ACACT4r]]
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* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
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** 2 associated gene(s):
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** '''24''' reactions found over '''133''' reactions in the full pathway
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*** [[B471_RS0110565]]
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* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
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*** [[B471_RS0115615]]
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** '''24''' reactions found over '''135''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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== Reconstruction information  ==
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*** [[orthology-bsubtilis]]
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* Category: [[orthology]]
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* [[ACACT7r]]
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** Source: [[orthology-cljungdahlii]]
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** 2 associated gene(s):
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*** Tool: [[pantograph]]
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*** [[B471_RS0115615]]
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* Category: [[manual]]
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*** [[B471_RS0110565]]
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** Source: [[manual-reaction_to_add_delete]]
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** 1 reconstruction source(s) associated:
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*** Comment: [[reaction added from literature evidence or biological expertise]]
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*** [[orthology-bsubtilis]]
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* [[ACALD]]
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** 5 associated gene(s):
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*** [[B471_RS0100095]]
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*** [[B471_RS0110020]]
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*** [[B471_RS0119455]]
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*** [[B471_RS0113260]]
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*** [[B471_RS0115620]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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* [[ECOAH1]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-reaction_to_add_delete]]
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* [[ECOAH9ir]]
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** 2 associated gene(s):
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*** [[B471_RS0115580]]
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*** [[B471_RS0110785]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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* [[HACD1]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-reaction_to_add_delete]]
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* [[MACCOAT]]
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** 2 associated gene(s):
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*** [[B471_RS0115615]]
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*** [[B471_RS0110565]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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== Reaction(s) not found ==
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* [http://bigg.ucsd.edu/universal/reactions/3HOPCD 3HOPCD]
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* [http://bigg.ucsd.edu/universal/reactions/3MCAT23DOX 3MCAT23DOX]
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* [http://bigg.ucsd.edu/universal/reactions/3OADPCOAT 3OADPCOAT]
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* [http://bigg.ucsd.edu/universal/reactions/3OXCOAT 3OXCOAT]
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* [http://bigg.ucsd.edu/universal/reactions/4CMLCL_kt 4CMLCL_kt]
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* [http://bigg.ucsd.edu/universal/reactions/4HBHYOX 4HBHYOX]
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* [http://bigg.ucsd.edu/universal/reactions/4HBZFm 4HBZFm]
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* [http://bigg.ucsd.edu/universal/reactions/4MCAT23DOX 4MCAT23DOX]
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* [http://bigg.ucsd.edu/universal/reactions/4OD2 4OD2]
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* [http://bigg.ucsd.edu/universal/reactions/4OT2 4OT2]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
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* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
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* [http://bigg.ucsd.edu/universal/reactions/ACALDh ACALDh]
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* [http://bigg.ucsd.edu/universal/reactions/BCOALIG BCOALIG]
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* [http://bigg.ucsd.edu/universal/reactions/BCOALIG2 BCOALIG2]
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* [http://bigg.ucsd.edu/universal/reactions/BZ12DOX BZ12DOX]
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* [http://bigg.ucsd.edu/universal/reactions/BZDIOLDH BZDIOLDH]
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* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLm C2M26DCOAHLm]
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* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLx C2M26DCOAHLx]
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* [http://bigg.ucsd.edu/universal/reactions/CAT23DOX CAT23DOX]
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* [http://bigg.ucsd.edu/universal/reactions/CATDOX CATDOX]
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* [http://bigg.ucsd.edu/universal/reactions/CHDCCH CHDCCH]
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* [http://bigg.ucsd.edu/universal/reactions/CMLDC CMLDC]
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* [http://bigg.ucsd.edu/universal/reactions/DHACOAH DHACOAH]
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* [http://bigg.ucsd.edu/universal/reactions/ECH_3hivcoa ECH_3hivcoa]
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* [http://bigg.ucsd.edu/universal/reactions/ECOAH11p ECOAH11p]
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* [http://bigg.ucsd.edu/universal/reactions/ECOAH12 ECOAH12]
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* [http://bigg.ucsd.edu/universal/reactions/ECOAH12m ECOAH12m]
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* [http://bigg.ucsd.edu/universal/reactions/ECOAH1_1 ECOAH1_1]
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* [http://bigg.ucsd.edu/universal/reactions/ECOAH1m ECOAH1m]
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* [http://bigg.ucsd.edu/universal/reactions/ECOAH1x ECOAH1x]
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* [http://bigg.ucsd.edu/universal/reactions/ECOAH9m ECOAH9m]
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* [http://bigg.ucsd.edu/universal/reactions/HACD10p HACD10p]
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* [http://bigg.ucsd.edu/universal/reactions/HACD1_1 HACD1_1]
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* [http://bigg.ucsd.edu/universal/reactions/HACD1i HACD1i]
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* [http://bigg.ucsd.edu/universal/reactions/HACD1m HACD1m]
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* [http://bigg.ucsd.edu/universal/reactions/HACD1x HACD1x]
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* [http://bigg.ucsd.edu/universal/reactions/HACD2 HACD2]
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* [http://bigg.ucsd.edu/universal/reactions/HACD2_1 HACD2_1]
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* [http://bigg.ucsd.edu/universal/reactions/HACD2i HACD2i]
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* [http://bigg.ucsd.edu/universal/reactions/HACD2m HACD2m]
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* [http://bigg.ucsd.edu/universal/reactions/HACD3 HACD3]
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* [http://bigg.ucsd.edu/universal/reactions/HACD3_1 HACD3_1]
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* [http://bigg.ucsd.edu/universal/reactions/HACD3i HACD3i]
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* [http://bigg.ucsd.edu/universal/reactions/HACD3m HACD3m]
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* [http://bigg.ucsd.edu/universal/reactions/HACD4 HACD4]
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* [http://bigg.ucsd.edu/universal/reactions/HACD4i HACD4i]
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* [http://bigg.ucsd.edu/universal/reactions/HACD4m HACD4m]
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* [http://bigg.ucsd.edu/universal/reactions/HACD4p HACD4p]
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* [http://bigg.ucsd.edu/universal/reactions/HACD5 HACD5]
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* [http://bigg.ucsd.edu/universal/reactions/HACD5i HACD5i]
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* [http://bigg.ucsd.edu/universal/reactions/HACD5m HACD5m]
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* [http://bigg.ucsd.edu/universal/reactions/HACD5p HACD5p]
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* [http://bigg.ucsd.edu/universal/reactions/HACD6 HACD6]
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* [http://bigg.ucsd.edu/universal/reactions/HACD6i HACD6i]
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* [http://bigg.ucsd.edu/universal/reactions/HACD6m HACD6m]
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* [http://bigg.ucsd.edu/universal/reactions/HACD6p HACD6p]
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* [http://bigg.ucsd.edu/universal/reactions/HACD7 HACD7]
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* [http://bigg.ucsd.edu/universal/reactions/HACD7i HACD7i]
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* [http://bigg.ucsd.edu/universal/reactions/HACD7m HACD7m]
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* [http://bigg.ucsd.edu/universal/reactions/HACD7p HACD7p]
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* [http://bigg.ucsd.edu/universal/reactions/HACD9 HACD9]
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* [http://bigg.ucsd.edu/universal/reactions/HACD9m HACD9m]
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* [http://bigg.ucsd.edu/universal/reactions/HACDp HACDp]
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* [http://bigg.ucsd.edu/universal/reactions/HADPCOADH3 HADPCOADH3]
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* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp HBCO_nadp]
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* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp_m HBCO_nadp_m]
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* [http://bigg.ucsd.edu/universal/reactions/HIBDkt HIBDkt]
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* [http://bigg.ucsd.edu/universal/reactions/HMNO HMNO]
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* [http://bigg.ucsd.edu/universal/reactions/HMSD HMSD]
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* [http://bigg.ucsd.edu/universal/reactions/HMSD2 HMSD2]
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* [http://bigg.ucsd.edu/universal/reactions/HMSH HMSH]
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* [http://bigg.ucsd.edu/universal/reactions/HMSH2 HMSH2]
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* [http://bigg.ucsd.edu/universal/reactions/HOCCD HOCCD]
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* [http://bigg.ucsd.edu/universal/reactions/HOPNTAL HOPNTAL]
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* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
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* [http://bigg.ucsd.edu/universal/reactions/KATp KATp]
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* [http://bigg.ucsd.edu/universal/reactions/MUCCYCI MUCCYCI]
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* [http://bigg.ucsd.edu/universal/reactions/MUCCY_kt MUCCY_kt]
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* [http://bigg.ucsd.edu/universal/reactions/MUCLI MUCLI]
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* [http://bigg.ucsd.edu/universal/reactions/OCAALD OCAALD]
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* [http://bigg.ucsd.edu/universal/reactions/OCHCCH OCHCCH]
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* [http://bigg.ucsd.edu/universal/reactions/OGCOAAT OGCOAAT]
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* [http://bigg.ucsd.edu/universal/reactions/OMAHY OMAHY]
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* [http://bigg.ucsd.edu/universal/reactions/OP4ENH OP4ENH]
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* [http://bigg.ucsd.edu/universal/reactions/OXOAEL OXOAEL]
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* [http://bigg.ucsd.edu/universal/reactions/PCADYOX PCADYOX]
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* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLm T2M26DCOAHLm]
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* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLx T2M26DCOAHLx]
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== External links  ==
 
== External links  ==
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{{#set: common_name=Benzoate degradation}}
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* EC Number : 4.2.1.22
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{{#set: reaction found=10}}
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* BioCyc : META:CYSTATHIONINE-BETA-SYNTHASE-RXN
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{{#set: total reaction=114}}
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* MetaNetX (MNX) Equation : MNXR97019
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{{#set: completion rate=9.0}}
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* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10112 10112]
 +
* Reactome : REACT_R-BTA-1614524
 +
* KEGG Reaction : R01290
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Cystathionine beta synthase}}
 +
{{#set: gene associated=B471_RS0108360|B471_RS0104440}}
 +
{{#set: in pathway=map01100|map01130|map01230|map00260|map00270}}
 +
{{#set: reconstruction category=orthology|manual}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|manual-reaction_to_add_delete}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction comment=reaction added from literature evidence or biological expertise}}

Latest revision as of 16:38, 21 March 2018

Reaction CYSTS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Cystathionine beta synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 L-Serine[c] + 1.0 L-Homocysteine[c] => 1.0 H2O H2O[c] + 1.0 L-Cystathionine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 4.2.1.22
  • BioCyc : META:CYSTATHIONINE-BETA-SYNTHASE-RXN
  • MetaNetX (MNX) Equation : MNXR97019
  • RHEA:
  • Reactome : REACT_R-BTA-1614524
  • KEGG Reaction : R01290





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