Difference between revisions of "3OAR60"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260] == * common_name: ** Glycine, serine and threonine metabolism * Synonym(s): == Rea...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/3OAR60 3OAR60] == * direction: ** REVERSIBLE * common name: ** 3-oxoacyl-[acyl-carrier-protein] red...")
 
Line 1: Line 1:
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[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/3OAR60 3OAR60] ==
−
* common_name:
+
* direction:
−
** Glycine, serine and threonine metabolism
+
** REVERSIBLE
 +
* common name:
 +
** 3-oxoacyl-[acyl-carrier-protein] reductase (n-C6:0)
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''24''' reactions found over '''133''' reactions in the full pathway
+
* With identifiers:
−
* [[4HTHRS]]
+
** 1.0 [[h]][c] '''+''' 1.0 [[nadph]][c] '''+''' 1.0 [[3ohexACP]][c] '''<=>''' 1.0 [[nadp]][c] '''+''' 1.0 [[3hhexACP]][c]
−
** 1 associated gene(s):
+
* With common name(s):
−
*** [[B471_RS0109995]]
+
** 1.0 H+[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''+''' 1.0 3-Oxohexanoyl-[acyl-carrier protein][c] '''<=>''' 1.0 Nicotinamide adenine dinucleotide phosphate[c] '''+''' 1.0 (R)-3-Hydroxyhexanoyl-[acyl-carrier protein][c]
−
** 1 reconstruction source(s) associated:
+
 
−
*** [[orthology-cljungdahlii]]
+
== Genes associated with this reaction  ==
−
* [[ASAD]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** 1 associated gene(s):
+
* Gene: [[B471_RS0109640]]
−
*** [[B471_RS0100620]]
+
** Source: [[orthology-cljungdahlii]]
−
** 3 reconstruction source(s) associated:
+
== Pathways  ==
−
*** [[orthology-cljungdahlii]]
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
*** [[orthology-bsubtilis]]
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
−
*** [[orthology-aferrooxidans]]
+
* [[map01212]]: [http://www.genome.jp/dbget-bin/www_bget?map01212 map01212]
−
* [[ASPK]]
+
** '''43''' reactions found over '''182''' reactions in the full pathway
−
** 2 associated gene(s):
+
* [[map00061]]: [http://www.genome.jp/dbget-bin/www_bget?map00061 map00061]
−
*** [[B471_RS0100615]]
+
** '''54''' reactions found over '''160''' reactions in the full pathway
−
*** [[B471_RS0107565]]
+
== Reconstruction information  ==
−
** 3 reconstruction source(s) associated:
+
* Category: [[orthology]]
−
*** [[orthology-cljungdahlii]]
+
** Source: [[orthology-cljungdahlii]]
−
*** [[orthology-bsubtilis]]
+
*** Tool: [[pantograph]]
−
*** [[orthology-aferrooxidans]]
+
−
* [[CYSTS]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0108360]]
+
−
*** [[B471_RS0104440]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[manual-reaction_to_add_delete]]
+
−
* [[DALAOX]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0117705]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[GHMT2r]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0101930]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[GLYAT]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS22400]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[GLYCK]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS21900]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
* [[GLYCL]]
+
−
** 6 associated gene(s):
+
−
*** [[B471_RS0101935]]
+
−
*** [[B471_RS0101930]]
+
−
*** [[B471_RS0101950]]
+
−
*** [[B471_RS0101940]]
+
−
*** [[B471_RS0101945]]
+
−
*** [[B471_RS0110920]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[HSDy]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS23515]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[HSK]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0109990]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
* [[PGCD]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0105500]]
+
−
*** [[B471_RS0108770]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[PGM]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0119315]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
* [[PSERT]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0105495]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
* [[PSP_L]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
+
−
* [[PSSA160]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
+
−
* [[PSSA161]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
+
−
* [[PSSA180]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
+
−
* [[PSSA181]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
+
−
* [[SARCOX]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0117705]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[THRD]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0106740]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[THRD_L]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0107435]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[THRS]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0109995]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[TRPS1]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0109425]]
+
−
*** [[B471_RS0109430]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
== Reaction(s) not found ==
+
−
* [http://bigg.ucsd.edu/universal/reactions/2AMACHYD 2AMACHYD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/34DHOXPEGOX 34DHOXPEGOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3HXKYNOXDA 3HXKYNOXDA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3MOXTYROX 3MOXTYROX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/41R1H2MAE12BOOX 41R1H2MAE12BOOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/41R2A1H12BOOX 41R2A1H12BOOX]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HOXINOXDA 5HOXINOXDA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/5HXKYNOXDA 5HXKYNOXDA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AGTi AGTi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AGTim AGTim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AGTix AGTix]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALASm ALASm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALCD22xi ALCD22xi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALCD22xim ALCD22xim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALCD23xi ALCD23xi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALCD23xim ALCD23xim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AOBUTDs AOBUTDs]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AOBUTDsm AOBUTDsm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AOBUTDxs AOBUTDxs]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APPLDHr APPLDHr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APRTO2 APRTO2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASADH ASADH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASPK_1 ASPK_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ATHRDHr ATHRDHr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BETALDHx BETALDHx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BETALDHxm BETALDHxm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BETALDHy BETALDHy]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BHMT BHMT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CHOLD CHOLD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CHOLD2m CHOLD2m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYS CYS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DABAAT DABAAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DALAOXx DALAOXx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DARGOp DARGOp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DDMCITALOR DDMCITALOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DMCITALOR DMCITALOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DORNOp DORNOp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DPROOp DPROOp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/FOMETRi FOMETRi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/G3PL G3PL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GACMTRc GACMTRc]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCC2 GCC2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCC2am GCC2am]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCC2bim GCC2bim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCC2cm GCC2cm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCCa GCCa]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCCam GCCam]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCCb GCCb]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCCbim GCCbim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCCc GCCc]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCCcm GCCcm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GHMT2rm GHMT2rm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYAMDTRc GLYAMDTRc]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYATm GLYATm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYATx GLYATx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYCDH_1 GLYCDH_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYCK2 GLYCK2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYCL_2 GLYCL_2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYCLm GLYCLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYDHD GLYDHD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYOp GLYOp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYPT GLYPT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYTA GLYTA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYTA_1 GLYTA_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GNMT GNMT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HPYRRx HPYRRx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HPYRRy HPYRRy]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HSDH HSDH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HSDxi HSDxi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HSK_1 HSK_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MAOLNOR MAOLNOR]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MTAM MTAM]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MTAM_nh4 MTAM_nh4]
+
−
* [http://bigg.ucsd.edu/universal/reactions/OHPBAT OHPBAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHcr PDHcr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PDHe3hr PDHe3hr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGLYDH PGLYDH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGMf PGMf]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PGMm PGMm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PSAT PSAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PSP PSP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PSP_D PSP_D]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PSP_Lpp PSP_Lpp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PSSA120 PSSA120]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PSSA_HP PSSA_HP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/R01465m R01465m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SARCOXp SARCOXp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SELCYSTGL SELCYSTGL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SELCYSTS SELCYSTS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SERD_D SERD_D]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SERD_L SERD_L]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SERH SERH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SERHL SERHL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SER_AL SER_AL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SGAT SGAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SPT_syn SPT_syn]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SPTc SPTc]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SPTix SPTix]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TAL TAL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/THFAT THFAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/THFATm THFATm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/THRA THRA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/THRAL THRAL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/THRA_1 THRA_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/THRD_Lm THRD_Lm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/THRS_1 THRS_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TRPS2 TRPS2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TRPS2h TRPS2h]
+
−
* [http://bigg.ucsd.edu/universal/reactions/TRPS3 TRPS3]
+
 
== External links  ==
 
== External links  ==
−
{{#set: common_name=Glycine, serine and threonine metabolism}}
+
* MetaNetX (MNX) Equation : MNXR94952
−
{{#set: reaction found=24}}
+
* KEGG Reaction : R04953
−
{{#set: total reaction=133}}
+
* EC Number : 1.1.1.100
−
{{#set: completion rate=18.0}}
+
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=3-oxoacyl-[acyl-carrier-protein] reductase (n-C6:0)}}
 +
{{#set: gene associated=B471_RS0109640}}
 +
{{#set: in pathway=map01100|map01212|map00061}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:38, 21 March 2018

Reaction 3OAR60

  • direction:
    • REVERSIBLE
  • common name:
    • 3-oxoacyl-[acyl-carrier-protein] reductase (n-C6:0)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H+[c] + 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] + 1.0 3-Oxohexanoyl-[acyl-carrier protein][c] <=> 1.0 Nicotinamide adenine dinucleotide phosphate[c] + 1.0 (R)-3-Hydroxyhexanoyl-[acyl-carrier protein][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR94952
  • KEGG Reaction : R04953
  • EC Number : 1.1.1.100
"3-oxoacyl-[acyl-carrier-protein] reductase (n-C6:0)" cannot be used as a page name in this wiki.



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