Difference between revisions of "Fmet"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PIabc PIabc] == * direction: ** LEFT-TO-RIGHT * common name: ** Phosphate transport via ABC system...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GAPD GAPD] == * direction: ** REVERSIBLE * common name: ** Glyceraldehyde-3-phosphate dehydrogenase...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PIabc PIabc] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GAPD GAPD] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Phosphate transport via ABC system
+
** Glyceraldehyde-3-phosphate dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h2o]][c] '''+''' 1.0 [[atp]][c] '''+''' 1.0 [[pi]][e] '''=>''' 1.0 [[adp]][c] '''+''' 2.0 [[pi]][c] '''+''' 1.0 [[h]][c]
+
** 1.0 [[pi]][c] '''+''' 1.0 [[nad]][c] '''+''' 1.0 [[g3p]][c] '''<=>''' 1.0 [[nadh]][c] '''+''' 1.0 [[13dpg]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H2O H2O[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 Phosphate[e] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 2.0 Phosphate[c] '''+''' 1.0 H+[c]
+
** 1.0 Phosphate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 Glyceraldehyde 3-phosphate[c] '''<=>''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 3-Phospho-D-glyceroyl phosphate[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0119355]]
+
* [[B471_RS0119330]]
−
** [[pantograph]]-[[bsubtilis]]
+
−
* [[B471_RS23690]]
+
−
** [[pantograph]]-[[bsubtilis]]
+
−
* [[B471_RS0119340]]
+
 
** [[pantograph]]-[[cljungdahlii]]
 
** [[pantograph]]-[[cljungdahlii]]
−
** [[pantograph]]-[[bsubtilis]]
 
−
* [[B471_RS0119345]]
 
 
** [[pantograph]]-[[bsubtilis]]
 
** [[pantograph]]-[[bsubtilis]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''471''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''212''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''101''' reactions found over '''715''' reactions in the full pathway
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''51''' reactions found over '''220''' reactions in the full pathway
 +
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 +
** '''78''' reactions found over '''228''' reactions in the full pathway
 +
* [[map00010]]: [http://www.genome.jp/dbget-bin/www_bget?map00010 map00010]
 +
** '''20''' reactions found over '''149''' reactions in the full pathway
 +
* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
 +
** '''18''' reactions found over '''71''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''148''' reactions found over '''694''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-cljungdahlii]]
−
*** [[cljungdahlii]]
+
*** Tool: [[pantograph]]
−
*** [[bsubtilis]]
+
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24440#1 24440#1]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10300 10300]
−
* MetaNetX (MNX) Equation : MNXR102870
+
* EC Number : 1.2.1.12
−
* EC Number : 3.6.3.27
+
* MetaNetX (MNX) Equation : MNXR100040
−
* BioCyc : META:ABC-27-RXN
+
* KEGG Reaction : R01061
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* BioCyc : META:GAPOXNPHOSPHN-RXN
−
{{#set: common name=Phosphate transport via ABC system}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: gene associated=B471_RS0119355|B471_RS23690|B471_RS0119340|B471_RS0119345}}
+
{{#set: common name=Glyceraldehyde-3-phosphate dehydrogenase}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=B471_RS0119330}}
 +
{{#set: in pathway=map01100|map01110|map01120|map01200|map01230|map00010|map00710|map01130}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=cljungdahlii|bsubtilis}}
 

Revision as of 23:33, 20 March 2018

Reaction GAPD

  • direction:
    • REVERSIBLE
  • common name:
    • Glyceraldehyde-3-phosphate dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Phosphate[c] + 1.0 Nicotinamide adenine dinucleotide[c] + 1.0 Glyceraldehyde 3-phosphate[c] <=> 1.0 Nicotinamide adenine dinucleotide - reduced[c] + 1.0 3-Phospho-D-glyceroyl phosphate[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 1.2.1.12
  • MetaNetX (MNX) Equation : MNXR100040
  • KEGG Reaction : R01061
  • BioCyc : META:GAPOXNPHOSPHN-RXN




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