Difference between revisions of "Skm5p"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PGL_CUT PGL_CUT] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * With identif...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/GK1 GK1] == * direction: ** REVERSIBLE * common name: ** Guanylate kinase (GMP:ATP) * Synonym(s):...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/PGL_CUT PGL_CUT] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/GK1 GK1] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 +
* common name:
 +
** Guanylate kinase (GMP:ATP)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[h2o]][c] '''+''' 1.0 [[6pgl]][c] '''<=>''' 1.0 [[h]][c] '''+''' 1.0 [[6pgc]][c]
+
** 1.0 [[gmp]][c] '''+''' 1.0 [[atp]][c] '''<=>''' 1.0 [[adp]][c] '''+''' 1.0 [[gdp]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 H2O H2O[c] '''+''' 1.0 6-phospho-D-glucono-1,5-lactone[c] '''<=>''' 1.0 H+[c] '''+''' 1.0 6-Phospho-D-gluconate[c]
+
** 1.0 GMP C10H12N5O8P[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''<=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 GDP C10H12N5O11P2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[B471_RS0108265]]
+
* [[B471_RS0114740]]
** MANUAL
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** [[pantograph]]-[[cljungdahlii]]
 +
** [[pantograph]]-[[bsubtilis]]
 +
** [[pantograph]]-[[aferrooxidans]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''471''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
 +
** '''64''' reactions found over '''298''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[manual]]:
+
* Category: [[orthology]]
** [[reaction found from orthology but we fixed reversibility based on biological expertise]]
+
** Source: [[orthology-cljungdahlii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-aferrooxidans]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20780 20780]
 +
* EC Number : 2.7.4.8
 +
* MetaNetX (MNX) Equation : MNXR100144
 +
* KEGG Reaction : R00332
 +
* BioCyc : META:GUANYL-KIN-RXN
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
{{#set: gene associated=B471_RS0108265}}
+
{{#set: common name=Guanylate kinase (GMP:ATP)}}
{{#set: in pathway=}}
+
{{#set: gene associated=B471_RS0114740}}
{{#set: reconstruction category=manual}}
+
{{#set: in pathway=map01100|map00230}}
{{#set: reconstruction source=reaction found from orthology but we fixed reversibility based on biological expertise}}
+
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis|orthology-aferrooxidans}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 23:36, 20 March 2018

Reaction GK1

  • direction:
    • REVERSIBLE
  • common name:
    • Guanylate kinase (GMP:ATP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 GMP C10H12N5O8P[c] + 1.0 ATP C10H12N5O13P3[c] <=> 1.0 ADP C10H12N5O10P2[c] + 1.0 GDP C10H12N5O11P2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 2.7.4.8
  • MetaNetX (MNX) Equation : MNXR100144
  • KEGG Reaction : R00332
  • BioCyc : META:GUANYL-KIN-RXN