Difference between revisions of "B471 RS0108585"

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== CUTIGEM description ==
 
== CUTIGEM description ==
 
== Automatic reconstruction with [http://aureme.genouest.org AuReMe] ==
 
== Automatic reconstruction with [http://aureme.genouest.org AuReMe] ==
The automatic reconstruction of ''S_thermosulfidooxidans_str_Cutipay'' results to a Genome scale Model containing 1067 reactions, 854 metabolites, 541 genes and 108 pathways. This GeM was obtained based on the following sources:
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Model summary: [[MEDIA:SCutipay_final.txt|summary]]
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Download '''AuReMe''' Input/Output [https://mybox.inria.fr data]
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The automatic reconstruction of ''S_thermosulfidooxidans_str_Cutipay'' results to a Genome scale [[MEDIA:SCutipay_lvl3.xml|Model]] containing 1067 reactions, 854 metabolites, 541 genes and 108 pathways. This GeM was obtained based on the following sources:
 
* Based on orthology data:
 
* Based on orthology data:
 
** Tool: [http://pathtastic.gforge.inria.fr Pantograph]
 
** Tool: [http://pathtastic.gforge.inria.fr Pantograph]
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== Collaborative curation ==  
 
== Collaborative curation ==  
 
* Suggest reactions to add or remove:
 
* Suggest reactions to add or remove:
** Download this [[MEDIA:Add_delete_reaction.csv|from]]
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** Download this [[MEDIA:Add_delete_reaction.csv|form]]
 
* Suggest new reactions to create and add:
 
* Suggest new reactions to create and add:
 
** Download this [[MEDIA:Reaction_creator.csv|form]]
 
** Download this [[MEDIA:Reaction_creator.csv|form]]
* '''Follow the examples given in the form to correctly share your suggestions'''
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* '''Follow the examples given in the form(s) to correctly share your suggestions'''
* Send the completed form(s) to: CONTACT_MAIL
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* Send the filled form(s) to: CONTACT_MAIL

Revision as of 15:18, 11 January 2018

CUTIGEM description

Automatic reconstruction with AuReMe

Model summary: summary

Download AuReMe Input/Output data

The automatic reconstruction of S_thermosulfidooxidans_str_Cutipay results to a Genome scale Model containing 1067 reactions, 854 metabolites, 541 genes and 108 pathways. This GeM was obtained based on the following sources:

  • Based on orthology data:
    • Tool: Pantograph
      • From template AFERROOXIDANS creation of a metabolic network containing: 220 reactions
      • From template CLJUNGDAHLII creation of a metabolic network containing: 338 reactions
      • From template BSUBTILIS creation of a metabolic network containing: 459 reactions
  • Based on expertise:
      • 405 reaction(s) added

Venn.png

Collaborative curation

  • Suggest reactions to add or remove:
  • Suggest new reactions to create and add:
  • Follow the examples given in the form(s) to correctly share your suggestions
  • Send the filled form(s) to: CONTACT_MAIL