Difference between revisions of "Glcur"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PIMS PIMS] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With identifier...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CYSTS CYSTS] == * direction: ** LEFT-TO-RIGHT * common name: ** Cystathionine beta synthase * Synon...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PIMS PIMS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/CYSTS CYSTS] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** Cystathionine beta synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 3.0 [[o2]][c] '''+''' 1.0 [[palmACP]][c] '''+''' 1.0 [[nadph]][c] '''=>''' 1.0 [[pimACP]][c] '''+''' 1.0 [[hpal]][c] '''+''' 1.0 [[nadp]][c] '''+''' 3.0 [[h2o]][c]
+
** 1.0 [[ser__L]][c] '''+''' 1.0 [[hcys__L]][c] '''=>''' 1.0 [[h2o]][c] '''+''' 1.0 [[cyst__L]][c]
 
* With common name(s):
 
* With common name(s):
−
** 3.0 O2 O2[c] '''+''' 1.0 Palmitoyl-ACP (n-C16:0ACP)[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''=>''' 1.0 Pimeloyl-[acyl-carrier protein][c] '''+''' 1.0 Heptanal C7H14O[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate[c] '''+''' 3.0 H2O H2O[c]
+
** 1.0 L-Serine[c] '''+''' 1.0 L-Homocysteine[c] '''=>''' 1.0 H2O H2O[c] '''+''' 1.0 L-Cystathionine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0105555]]
+
* [[B471_RS0108360]]
−
** MANUAL
+
** [[pantograph]]-[[cljungdahlii]]
 +
* [[B471_RS0104440]]
 +
** [[pantograph]]-[[cljungdahlii]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''471''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''148''' reactions found over '''694''' reactions in the full pathway
 +
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 +
** '''78''' reactions found over '''228''' reactions in the full pathway
 +
* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
 +
** '''24''' reactions found over '''133''' reactions in the full pathway
 +
* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
 +
** '''24''' reactions found over '''135''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[orthology]]
−
** [[reaction from orthology templates not found by pantograph]]
+
** Source: [[orthology-cljungdahlii]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-reaction_to_add_delete]]
 +
*** Comment: [[reaction added from literature evidence or biological expertise]]
 
== External links  ==
 
== External links  ==
 +
* EC Number : 4.2.1.22
 +
* BioCyc : META:CYSTATHIONINE-BETA-SYNTHASE-RXN
 +
* MetaNetX (MNX) Equation : MNXR97019
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10112 10112]
 +
* Reactome : REACT_R-BTA-1614524
 +
* KEGG Reaction : R01290
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=B471_RS0105555}}
+
{{#set: common name=Cystathionine beta synthase}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=B471_RS0108360|B471_RS0104440}}
−
{{#set: reconstruction category=manual}}
+
{{#set: in pathway=map01100|map01130|map01230|map00260|map00270}}
−
{{#set: reconstruction source=reaction from orthology templates not found by pantograph}}
+
{{#set: reconstruction category=orthology|manual}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|manual-reaction_to_add_delete}}
 +
{{#set: reconstruction tool=pantograph}}
 +
{{#set: reconstruction comment=reaction added from literature evidence or biological expertise}}

Revision as of 23:32, 20 March 2018

Reaction CYSTS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Cystathionine beta synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 L-Serine[c] + 1.0 L-Homocysteine[c] => 1.0 H2O H2O[c] + 1.0 L-Cystathionine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 4.2.1.22
  • BioCyc : META:CYSTATHIONINE-BETA-SYNTHASE-RXN
  • MetaNetX (MNX) Equation : MNXR97019
  • RHEA:
  • Reactome : REACT_R-BTA-1614524
  • KEGG Reaction : R01290





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