Difference between revisions of "Hmgcoa"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/OCTDPS OCTDPS] == * direction: ** LEFT-TO-RIGHT * common name: ** Octaprenyl pyrophosphate synthase...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NNATr_CUT NNATr_CUT] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/OCTDPS OCTDPS] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/NNATr_CUT NNATr_CUT] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
* common name:
 
** Octaprenyl pyrophosphate synthase
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[frdp]][c] '''+''' 5.0 [[ipdp]][c] '''=>''' 5.0 [[ppi]][c] '''+''' 1.0 [[octdp]][c]
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** 1.0 [[h]][c] '''+''' 1.0 [[nicrnt]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[ppi]][c] '''+''' 1.0 [[dnad]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 Farnesyl diphosphate[c] '''+''' 5.0 Isopentenyl diphosphate[c] '''=>''' 5.0 Diphosphate[c] '''+''' 1.0 All-trans-Octaprenyl diphosphate[c]
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** 1.0 H+[c] '''+''' 1.0 Nicotinate D-ribonucleotide[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 Diphosphate[c] '''+''' 1.0 Deamino-NAD+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[B471_RS0105645]]
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* [[B471_RS0119010]]
** [[pantograph]]-[[cljungdahlii]]
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** missing_rxn_creator
** [[pantograph]]-[[aferrooxidans]]
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== Pathways  ==
 
== Pathways  ==
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
** '''212''' reactions found over '''1054''' reactions in the full pathway
 
* [[map00900]]: [http://www.genome.jp/dbget-bin/www_bget?map00900 map00900]
 
** '''16''' reactions found over '''67''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
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* Category: [[manual]]
** [[pantograph]]:
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** Source: [[manual-missing_rxn_creator]]
*** [[aferrooxidans]]
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*** Comment: [[reaction found from orthology but we fixed reversibility based on biological expertise]]
*** [[cljungdahlii]]
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== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27798 27798]
 
* BioCyc : META:RXN-8992
 
* MetaNetX (MNX) Equation : MNXR102153
 
* KEGG Reaction : R09248
 
* EC Number : 2.5.1.90
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=Octaprenyl pyrophosphate synthase}}
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{{#set: gene associated=B471_RS0119010}}
{{#set: gene associated=B471_RS0105645}}
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{{#set: in pathway=}}
{{#set: in pathway=map01110|map00900}}
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{{#set: reconstruction category=manual}}
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=manual-missing_rxn_creator}}
{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction comment=reaction found from orthology but we fixed reversibility based on biological expertise}}
{{#set: reconstruction source=aferrooxidans|cljungdahlii}}
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Revision as of 23:34, 20 March 2018

Reaction NNATr_CUT

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H+[c] + 1.0 Nicotinate D-ribonucleotide[c] + 1.0 ATP C10H12N5O13P3[c] => 1.0 Diphosphate[c] + 1.0 Deamino-NAD+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links