Difference between revisions of "Copre4"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/OCBT OCBT] == * direction: ** REVERSIBLE * common name: ** Ornithine carbamoyltransferase * Synonym...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NTD5 NTD5] == * direction: ** LEFT-TO-RIGHT * common name: ** 5'-nucleotidase (dTMP) * Synonym(s):...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/OCBT OCBT] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/NTD5 NTD5] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Ornithine carbamoyltransferase
+
** 5'-nucleotidase (dTMP)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[cbp]][c] '''+''' 1.0 [[orn]][c] '''<=>''' 1.0 [[citr__L]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[pi]][c]
+
** 1.0 [[dtmp]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[pi]][c] '''+''' 1.0 [[thymd]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Carbamoyl phosphate[c] '''+''' 1.0 Ornithine[c] '''<=>''' 1.0 L-Citrulline[c] '''+''' 1.0 H+[c] '''+''' 1.0 Phosphate[c]
+
** 1.0 DTMP C10H13N2O8P[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Phosphate[c] '''+''' 1.0 Thymidine C10H14N2O5[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0119565]]
+
* [[B471_RS0110685]]
−
** [[pantograph]]-[[cljungdahlii]]
+
** [[pantograph]]-[[bsubtilis]]
−
** [[pantograph]]-[[aferrooxidans]]
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 +
** '''68''' reactions found over '''244''' reactions in the full pathway
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
−
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
+
−
** '''148''' reactions found over '''694''' reactions in the full pathway
+
−
* [[map00220]]: [http://www.genome.jp/dbget-bin/www_bget?map00220 map00220]
+
−
** '''13''' reactions found over '''65''' reactions in the full pathway
+
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
−
** '''212''' reactions found over '''1054''' reactions in the full pathway
+
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
+
−
** '''78''' reactions found over '''228''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-bsubtilis]]
−
*** [[aferrooxidans]]
+
*** Tool: [[pantograph]]
−
*** [[cljungdahlii]]
+
 
== External links  ==
 
== External links  ==
−
* EC Number : 2.1.3.3
 
−
* BioCyc : META:ORNCARBAMTRANSFER-RXN
 
−
* MetaNetX (MNX) Equation : MNXR102137
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19513 19513]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11080 11080]
−
* Reactome : REACT_R-ATH-70560
+
* EC Number : 3.1.3.35
−
* KEGG Reaction : R01398
+
* MetaNetX (MNX) Equation : MNXR102035
−
{{#set: direction=REVERSIBLE}}
+
* KEGG Reaction : R01569
−
{{#set: common name=Ornithine carbamoyltransferase}}
+
* BioCyc : META:THYMIDYLATE-5-PHOSPHATASE-RXN
−
{{#set: gene associated=B471_RS0119565}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: in pathway=map01100|map01130|map00220|map01110|map01230}}
+
{{#set: common name=5'-nucleotidase (dTMP)}}
 +
{{#set: gene associated=B471_RS0110685}}
 +
{{#set: in pathway=map00240|map01100}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-bsubtilis}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=aferrooxidans|cljungdahlii}}
 

Revision as of 23:34, 20 March 2018

Reaction NTD5

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5'-nucleotidase (dTMP)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 DTMP C10H13N2O8P[c] + 1.0 H2O H2O[c] => 1.0 Phosphate[c] + 1.0 Thymidine C10H14N2O5[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 3.1.3.35
  • MetaNetX (MNX) Equation : MNXR102035
  • KEGG Reaction : R01569
  • BioCyc : META:THYMIDYLATE-5-PHOSPHATASE-RXN




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