Difference between revisions of "2dr5p"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/CBPS CBPS] == * direction: ** LEFT-TO-RIGHT * common name: ** Carbamoyl-phosphate synthase (glutami...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/LYSDC LYSDC] == * direction: ** LEFT-TO-RIGHT * common name: ** Lysine decarboxylase * Synonym(s):...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/CBPS CBPS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/LYSDC LYSDC] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Carbamoyl-phosphate synthase (glutamine-hydrolysing)
+
** Lysine decarboxylase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h2o]][c] '''+''' 1.0 [[gln__L]][c] '''+''' 2.0 [[atp]][c] '''+''' 1.0 [[hco3]][c] '''=>''' 2.0 [[h]][c] '''+''' 2.0 [[adp]][c] '''+''' 1.0 [[cbp]][c] '''+''' 1.0 [[glu__L]][c] '''+''' 1.0 [[pi]][c]
+
** 1.0 [[h]][c] '''+''' 1.0 [[lys__L]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[15dap]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H2O H2O[c] '''+''' 1.0 L-Glutamine[c] '''+''' 2.0 ATP C10H12N5O13P3[c] '''+''' 1.0 Bicarbonate[c] '''=>''' 2.0 H+[c] '''+''' 2.0 ADP C10H12N5O10P2[c] '''+''' 1.0 Carbamoyl phosphate[c] '''+''' 1.0 L-Glutamate[c] '''+''' 1.0 Phosphate[c]
+
** 1.0 H+[c] '''+''' 1.0 L-Lysine[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 1,5-Diaminopentane[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0109105]]
+
* [[B471_RS21410]]
 
** [[pantograph]]-[[cljungdahlii]]
 
** [[pantograph]]-[[cljungdahlii]]
 
** [[pantograph]]-[[bsubtilis]]
 
** [[pantograph]]-[[bsubtilis]]
−
** [[pantograph]]-[[aferrooxidans]]
 
−
* [[B471_RS0109100]]
 
−
** [[pantograph]]-[[cljungdahlii]]
 
−
** [[pantograph]]-[[bsubtilis]]
 
−
** [[pantograph]]-[[aferrooxidans]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 
−
** '''68''' reactions found over '''244''' reactions in the full pathway
 
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00250]]: [http://www.genome.jp/dbget-bin/www_bget?map00250 map00250]
+
* [[map00960]]: [http://www.genome.jp/dbget-bin/www_bget?map00960 map00960]
−
** '''22''' reactions found over '''93''' reactions in the full pathway
+
** '''4''' reactions found over '''27''' reactions in the full pathway
 +
* [[map00310]]: [http://www.genome.jp/dbget-bin/www_bget?map00310 map00310]
 +
** '''12''' reactions found over '''138''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''212''' reactions found over '''1054''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-cljungdahlii]]
−
*** [[aferrooxidans]]
+
*** Tool: [[pantograph]]
−
*** [[cljungdahlii]]
+
** Source: [[orthology-bsubtilis]]
−
*** [[bsubtilis]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18633 18633]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22352 22352]
−
* BioCyc : META:CARBPSYN-RXN
+
* EC Number : 4.1.1.18
−
* MetaNetX (MNX) Equation : MNXR96485
+
* MetaNetX (MNX) Equation : MNXR101256
−
* KEGG Reaction : R00575
+
* KEGG Reaction : R00462
−
* EC Number : 6.3.5.5
+
* BioCyc : META:LYSDECARBOX-RXN
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Carbamoyl-phosphate synthase (glutamine-hydrolysing)}}
+
{{#set: common name=Lysine decarboxylase}}
−
{{#set: gene associated=B471_RS0109105|B471_RS0109100}}
+
{{#set: gene associated=B471_RS21410}}
−
{{#set: in pathway=map00240|map01100|map00250}}
+
{{#set: in pathway=map01100|map00960|map00310|map01110}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=aferrooxidans|cljungdahlii|bsubtilis}}
 

Revision as of 23:36, 20 March 2018

Reaction LYSDC

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Lysine decarboxylase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H+[c] + 1.0 L-Lysine[c] => 1.0 CO2 CO2[c] + 1.0 1,5-Diaminopentane[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 4.1.1.18
  • MetaNetX (MNX) Equation : MNXR101256
  • KEGG Reaction : R00462
  • BioCyc : META:LYSDECARBOX-RXN




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