Difference between revisions of "Octal"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/NTD5 NTD5] == * direction: ** LEFT-TO-RIGHT * common name: ** 5'-nucleotidase (dTMP) * Synonym(s):...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/EAR60y_CUT EAR60y_CUT] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * With i...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/NTD5 NTD5] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/EAR60y_CUT EAR60y_CUT] ==
 
* direction:
 
* direction:
** LEFT-TO-RIGHT
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** REVERSIBLE
* common name:
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** 5'-nucleotidase (dTMP)
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* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1.0 [[dtmp]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[thymd]][c] '''+''' 1.0 [[pi]][c]
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** 1.0 [[h]][c] '''+''' 1.0 [[nadph]][c] '''+''' 1.0 [[thex2eACP]][c] '''<=>''' 1.0 [[hexACP]][c] '''+''' 1.0 [[nadp]][c]
 
* With common name(s):
 
* With common name(s):
** 1.0 DTMP C10H13N2O8P[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Thymidine C10H14N2O5[c] '''+''' 1.0 Phosphate[c]
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** 1.0 H+[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] '''+''' 1.0 Trans-Hex-2-enoyl-[acyl-carrier protein][c] '''<=>''' 1.0 Hexanoyl-ACP (n-C6:0ACP)[c] '''+''' 1.0 Nicotinamide adenine dinucleotide phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* [[B471_RS0110685]]
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* [[B471_RS0108775]]
** [[pantograph]]-[[bsubtilis]]
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** missing_rxn_creator
 
== Pathways  ==
 
== Pathways  ==
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''472''' reactions found over '''2349''' reactions in the full pathway
 
* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
 
** '''68''' reactions found over '''244''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
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* Category: [[manual]]
** [[pantograph]]:
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** Source: [[manual-missing_rxn_creator]]
*** [[bsubtilis]]
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*** Comment: [[reaction found from orthology but we fixed reversibility based on biological expertise]]
 
== External links  ==
 
== External links  ==
* RHEA:
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{{#set: direction=REVERSIBLE}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11080 11080]
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{{#set: gene associated=B471_RS0108775}}
* BioCyc : META:THYMIDYLATE-5-PHOSPHATASE-RXN
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{{#set: in pathway=}}
* MetaNetX (MNX) Equation : MNXR102035
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{{#set: reconstruction category=manual}}
* KEGG Reaction : R01569
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{{#set: reconstruction source=manual-missing_rxn_creator}}
* EC Number : 3.1.3.35
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{{#set: reconstruction comment=reaction found from orthology but we fixed reversibility based on biological expertise}}
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=5'-nucleotidase (dTMP)}}
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{{#set: gene associated=B471_RS0110685}}
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{{#set: in pathway=map01100|map00240}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=bsubtilis}}
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Revision as of 00:36, 21 March 2018

Reaction EAR60y_CUT

  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H+[c] + 1.0 Nicotinamide adenine dinucleotide phosphate - reduced[c] + 1.0 Trans-Hex-2-enoyl-[acyl-carrier protein][c] <=> 1.0 Hexanoyl-ACP (n-C6:0ACP)[c] + 1.0 Nicotinamide adenine dinucleotide phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links