Difference between revisions of "Thm"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/METS METS] == * direction: ** LEFT-TO-RIGHT * common name: ** Methionine synthase * Synonym(s): ==...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PMDPHT PMDPHT] == * direction: ** LEFT-TO-RIGHT * common name: ** Pyrimidine phosphatase * Synonym(...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/METS METS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/PMDPHT PMDPHT] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Methionine synthase
+
** Pyrimidine phosphatase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[5mthf]][c] '''+''' 1.0 [[hcys__L]][c] '''=>''' 1.0 [[met__L]][c] '''+''' 1.0 [[thf]][c] '''+''' 1.0 [[h]][c]
+
** 1.0 [[5aprbu]][c] '''+''' 1.0 [[h2o]][c] '''=>''' 1.0 [[pi]][c] '''+''' 1.0 [[4r5au]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 5-Methyltetrahydrofolate[c] '''+''' 1.0 L-Homocysteine[c] '''=>''' 1.0 L-Methionine[c] '''+''' 1.0 5,6,7,8-Tetrahydrofolate[c] '''+''' 1.0 H+[c]
+
** 1.0 5-Amino-6-(5'-phosphoribitylamino)uracil[c] '''+''' 1.0 H2O H2O[c] '''=>''' 1.0 Phosphate[c] '''+''' 1.0 4-(1-D-Ribitylamino)-5-aminouracil[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[B471_RS0109820]]
 
−
** [[pantograph]]-[[bsubtilis]]
 
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00450]]: [http://www.genome.jp/dbget-bin/www_bget?map00450 map00450]
+
−
** '''6''' reactions found over '''35''' reactions in the full pathway
+
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
** '''212''' reactions found over '''1054''' reactions in the full pathway
 
** '''212''' reactions found over '''1054''' reactions in the full pathway
−
* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
+
* [[map00740]]: [http://www.genome.jp/dbget-bin/www_bget?map00740 map00740]
−
** '''24''' reactions found over '''135''' reactions in the full pathway
+
** '''8''' reactions found over '''38''' reactions in the full pathway
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
+
−
** '''78''' reactions found over '''228''' reactions in the full pathway
+
−
* [[map00670]]: [http://www.genome.jp/dbget-bin/www_bget?map00670 map00670]
+
−
** '''13''' reactions found over '''65''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[manual]]
−
** [[pantograph]]:
+
** Source: [[manual-reaction_to_add_delete]]
−
*** [[bsubtilis]]
+
*** Comment: [[reaction added from literature evidence or biological expertise]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11172 11172]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25197 25197]
−
* MetaNetX (MNX) Equation : MNXR101481
+
* BioCyc : META:RIBOPHOSPHAT-RXN
−
* KEGG Reaction : R00946
+
* MetaNetX (MNX) Equation : MNXR96145
−
* EC Number : 2.1.1.13
+
* KEGG Reaction : R07280
 +
* EC Number : 3.1.3.-
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Methionine synthase}}
+
{{#set: common name=Pyrimidine phosphatase}}
−
{{#set: gene associated=B471_RS0109820}}
+
{{#set: in pathway=map01100|map01110|map00740}}
−
{{#set: in pathway=map01100|map00450|map01110|map00270|map01230|map00670}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=manual-reaction_to_add_delete}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction comment=reaction added from literature evidence or biological expertise}}
−
{{#set: reconstruction source=bsubtilis}}
+

Revision as of 23:38, 20 March 2018

Reaction PMDPHT

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Pyrimidine phosphatase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 5-Amino-6-(5'-phosphoribitylamino)uracil[c] + 1.0 H2O H2O[c] => 1.0 Phosphate[c] + 1.0 4-(1-D-Ribitylamino)-5-aminouracil[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:RIBOPHOSPHAT-RXN
  • MetaNetX (MNX) Equation : MNXR96145
  • KEGG Reaction : R07280
  • EC Number : 3.1.3.-




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