Difference between revisions of "Metox"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ACBIPGT ACBIPGT] == * direction: ** LEFT-TO-RIGHT * common name: ** Adenosyl cobinamide phosphate g...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/RBFSb RBFSb] == * direction: ** LEFT-TO-RIGHT * common name: ** Riboflavin synthase * Synonym(s):...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ACBIPGT ACBIPGT] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/RBFSb RBFSb] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Adenosyl cobinamide phosphate guanyltransferase
+
** Riboflavin synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h]][c] '''+''' 1.0 [[gtp]][c] '''+''' 1.0 [[adocbip]][c] '''=>''' 1.0 [[ppi]][c] '''+''' 1.0 [[agdpcbi]][c]
+
** 2.0 [[dmlz]][c] '''=>''' 1.0 [[ribflv]][c] '''+''' 1.0 [[4r5au]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H+[c] '''+''' 1.0 GTP C10H12N5O14P3[c] '''+''' 1.0 Adenosyl cobinamide phosphate[c] '''=>''' 1.0 Diphosphate[c] '''+''' 1.0 Adenosine-GDP-cobinamide[c]
+
** 2.0 6,7-Dimethyl-8-(1-D-ribityl)lumazine[c] '''=>''' 1.0 Riboflavin C17H20N4O6[c] '''+''' 1.0 4-(1-D-Ribitylamino)-5-aminouracil[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[B471_RS0107785]]
 +
** [[pantograph]]-[[bsubtilis]]
 +
** [[pantograph]]-[[aferrooxidans]]
 +
* [[B471_RS0107775]]
 +
** [[pantograph]]-[[bsubtilis]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00860]]: [http://www.genome.jp/dbget-bin/www_bget?map00860 map00860]
+
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
−
** '''23''' reactions found over '''106''' reactions in the full pathway
+
** '''212''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00740]]: [http://www.genome.jp/dbget-bin/www_bget?map00740 map00740]
 +
** '''8''' reactions found over '''38''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[orthology]]
−
** [[reaction added from literature evidence or biological expertise]]
+
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-aferrooxidans]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22712 22712]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20772 20772]
−
* BioCyc : META:COBINPGUANYLYLTRANS-RXN
+
* EC Number : 2.5.1.9
−
* MetaNetX (MNX) Equation : MNXR95216
+
* MetaNetX (MNX) Equation : MNXR103430
−
* KEGG Reaction : R05222
+
* KEGG Reaction : R00066
−
* EC Number : 2.7.7.62
+
* BioCyc : META:RIBOFLAVIN-SYN-RXN
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Adenosyl cobinamide phosphate guanyltransferase}}
+
{{#set: common name=Riboflavin synthase}}
−
{{#set: in pathway=map01100|map00860}}
+
{{#set: gene associated=B471_RS0107785|B471_RS0107775}}
−
{{#set: reconstruction category=manual}}
+
{{#set: in pathway=map01100|map01110|map00740}}
−
{{#set: reconstruction source=reaction added from literature evidence or biological expertise}}
+
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-bsubtilis|orthology-aferrooxidans}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 23:39, 20 March 2018

Reaction RBFSb

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Riboflavin synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 2.0 6,7-Dimethyl-8-(1-D-ribityl)lumazine[c] => 1.0 Riboflavin C17H20N4O6[c] + 1.0 4-(1-D-Ribitylamino)-5-aminouracil[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 2.5.1.9
  • MetaNetX (MNX) Equation : MNXR103430
  • KEGG Reaction : R00066
  • BioCyc : META:RIBOFLAVIN-SYN-RXN




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