Difference between revisions of "Cellb"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MCTP1Bex MCTP1Bex] == * direction: ** LEFT-TO-RIGHT * common name: ** Murein crosslinking transpept...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DALAOX DALAOX] == * direction: ** LEFT-TO-RIGHT * common name: ** D amino acid oxidase * Synonym(s)...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/MCTP1Bex MCTP1Bex] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/DALAOX DALAOX] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Murein crosslinking transpeptidase 1B:(A2pm->A2pm) (periplasm)
+
** D amino acid oxidase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[murein5p5p]][e] '''=>''' 1.0 [[murein5px3p]][e] '''+''' 1.0 [[alaala]][e]
+
** 1.0 [[ala__D]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[o2]][c] '''=>''' 1.0 [[nh4]][c] '''+''' 1.0 [[h2o2]][c] '''+''' 1.0 [[pyr]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Two linked disacharide pentapeptide murein units (uncrosslinked, middle of chain)[e] '''=>''' 1.0 Two disacharide linked murein units, pentapeptide corsslinked tripeptide (A2pm->A2pm) (middle of chain)[e] '''+''' 1.0 D-Alanyl-D-alanine[e]
+
** 1.0 D-Alanine[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 O2 O2[c] '''=>''' 1.0 Ammonium[c] '''+''' 1.0 Hydrogen peroxide[c] '''+''' 1.0 Pyruvate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0109660]]
+
* [[B471_RS0117705]]
−
** [[pantograph]]-[[cljungdahlii]]
+
** [[pantograph]]-[[bsubtilis]]
−
* [[B471_RS0113655]]
+
−
** [[pantograph]]-[[cljungdahlii]]
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''471''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00311]]: [http://www.genome.jp/dbget-bin/www_bget?map00311 map00311]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[map00472]]: [http://www.genome.jp/dbget-bin/www_bget?map00472 map00472]
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[map00330]]: [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
 +
** '''19''' reactions found over '''149''' reactions in the full pathway
 +
* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
 +
** '''24''' reactions found over '''133''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''148''' reactions found over '''694''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-bsubtilis]]
−
*** [[cljungdahlii]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR101427
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22688 22688]
 +
* EC Number : 1.4.3.19
 +
* MetaNetX (MNX) Equation : MNXR97134
 +
* KEGG Reaction : R05861
 +
* BioCyc : META:RXN-8672
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Murein crosslinking transpeptidase 1B:(A2pm->A2pm) (periplasm)}}
+
{{#set: common name=D amino acid oxidase}}
−
{{#set: gene associated=B471_RS0109660|B471_RS0113655}}
+
{{#set: gene associated=B471_RS0117705}}
−
{{#set: in pathway=}}
+
{{#set: in pathway=map01100|map00311|map00472|map00330|map00260|map01130}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-bsubtilis}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=cljungdahlii}}
 

Revision as of 23:40, 20 March 2018

Reaction DALAOX

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • D amino acid oxidase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 D-Alanine[c] + 1.0 H2O H2O[c] + 1.0 O2 O2[c] => 1.0 Ammonium[c] + 1.0 Hydrogen peroxide[c] + 1.0 Pyruvate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 1.4.3.19
  • MetaNetX (MNX) Equation : MNXR97134
  • KEGG Reaction : R05861
  • BioCyc : META:RXN-8672




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