Difference between revisions of "Gtp"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/LYSDC LYSDC] == * direction: ** LEFT-TO-RIGHT * common name: ** Lysine decarboxylase * Synonym(s):...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/5HBZIDS2 5HBZIDS2] == * direction: ** LEFT-TO-RIGHT * common name: ** 5-hydroxybenzimidazole syntha...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/LYSDC LYSDC] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/5HBZIDS2 5HBZIDS2] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Lysine decarboxylase
+
** 5-hydroxybenzimidazole synthase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[lys__L]][c] '''+''' 1.0 [[h]][c] '''=>''' 1.0 [[15dap]][c] '''+''' 1.0 [[co2]][c]
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** 1.0 [[air]][c] '''=>''' 1.0 [[nh4]][c] '''+''' 1.0 [[for]][c] '''+''' 1.0 [[pi]][c] '''+''' 1.0 [[5hbzid]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 L-Lysine[c] '''+''' 1.0 H+[c] '''=>''' 1.0 1,5-Diaminopentane[c] '''+''' 1.0 CO2 CO2[c]
+
** 1.0 5-amino-1-(5-phospho-D-ribosyl)imidazole[c] '''=>''' 1.0 Ammonium[c] '''+''' 1.0 Formate[c] '''+''' 1.0 Phosphate[c] '''+''' 1.0 5-hydroxybenzimidazole[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[B471_RS21410]]
 
−
** [[pantograph]]-[[cljungdahlii]]
 
−
** [[pantograph]]-[[bsubtilis]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
−
** '''472''' reactions found over '''2349''' reactions in the full pathway
 
−
* [[map00960]]: [http://www.genome.jp/dbget-bin/www_bget?map00960 map00960]
 
−
** '''4''' reactions found over '''27''' reactions in the full pathway
 
−
* [[map00310]]: [http://www.genome.jp/dbget-bin/www_bget?map00310 map00310]
 
−
** '''12''' reactions found over '''138''' reactions in the full pathway
 
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 
−
** '''212''' reactions found over '''1054''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[manual]]
−
** [[pantograph]]:
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** Source: [[manual-reaction_to_add_delete]]
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*** [[cljungdahlii]]
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*** Comment: [[reaction added from literature evidence or biological expertise]]
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*** [[bsubtilis]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
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* MetaNetX (MNX) Equation : MNXR95077
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22352 22352]
+
−
* BioCyc : META:LYSDECARBOX-RXN
+
−
* MetaNetX (MNX) Equation : MNXR101256
+
−
* KEGG Reaction : R00462
+
−
* EC Number : 4.1.1.18
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Lysine decarboxylase}}
+
{{#set: common name=5-hydroxybenzimidazole synthase}}
−
{{#set: gene associated=B471_RS21410}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=map01100|map00960|map00310|map01110}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=manual-reaction_to_add_delete}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction comment=reaction added from literature evidence or biological expertise}}
−
{{#set: reconstruction source=cljungdahlii|bsubtilis}}
+

Revision as of 00:40, 21 March 2018

Reaction 5HBZIDS2

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5-hydroxybenzimidazole synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 5-amino-1-(5-phospho-D-ribosyl)imidazole[c] => 1.0 Ammonium[c] + 1.0 Formate[c] + 1.0 Phosphate[c] + 1.0 5-hydroxybenzimidazole[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR95077




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