Difference between revisions of "Trnaphe"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/ILEt2r ILEt2r] == * direction: ** REVERSIBLE * common name: ** L isoleucine reversible transport vi...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TRPS1 TRPS1] == * direction: ** LEFT-TO-RIGHT * common name: ** Tryptophan synthase (indoleglycerol...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/ILEt2r ILEt2r] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/TRPS1 TRPS1] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** L isoleucine reversible transport via proton symport
+
** Tryptophan synthase (indoleglycerol phosphate)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[h]][e] '''+''' 1.0 [[ile__L]][e] '''<=>''' 1.0 [[ile__L]][c] '''+''' 1.0 [[h]][c]
+
** 1.0 [[3ig3p]][c] '''+''' 1.0 [[ser__L]][c] '''=>''' 1.0 [[trp__L]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[g3p]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 H+[e] '''+''' 1.0 L-Isoleucine[e] '''<=>''' 1.0 L-Isoleucine[c] '''+''' 1.0 H+[c]
+
** 1.0 C'-(3-Indolyl)-glycerol 3-phosphate[c] '''+''' 1.0 L-Serine[c] '''=>''' 1.0 L-Tryptophan[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 Glyceraldehyde 3-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[B471_RS0109425]]
 +
** [[pantograph]]-[[cljungdahlii]]
 +
** [[pantograph]]-[[bsubtilis]]
 +
* [[B471_RS0109430]]
 +
** [[pantograph]]-[[cljungdahlii]]
 +
** [[pantograph]]-[[bsubtilis]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''471''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''212''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
 +
** '''78''' reactions found over '''228''' reactions in the full pathway
 +
* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
 +
** '''24''' reactions found over '''133''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''148''' reactions found over '''694''' reactions in the full pathway
 +
* [[map00400]]: [http://www.genome.jp/dbget-bin/www_bget?map00400 map00400]
 +
** '''17''' reactions found over '''59''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[orthology]]
−
** [[reaction added from literature evidence or biological expertise]]
+
** Source: [[orthology-cljungdahlii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR100822
+
* RHEA:
−
{{#set: direction=REVERSIBLE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10532 10532]
−
{{#set: common name=L isoleucine reversible transport via proton symport}}
+
* EC Number : 4.2.1.20
−
{{#set: in pathway=}}
+
* MetaNetX (MNX) Equation : MNXR104343
−
{{#set: reconstruction category=manual}}
+
* KEGG Reaction : R02722
−
{{#set: reconstruction source=reaction added from literature evidence or biological expertise}}
+
* BioCyc : META:TRYPSYN-RXN
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Tryptophan synthase (indoleglycerol phosphate)}}
 +
{{#set: gene associated=B471_RS0109425|B471_RS0109430}}
 +
{{#set: in pathway=map01100|map01110|map01230|map00260|map01130|map00400}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 23:41, 20 March 2018

Reaction TRPS1

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Tryptophan synthase (indoleglycerol phosphate)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 C'-(3-Indolyl)-glycerol 3-phosphate[c] + 1.0 L-Serine[c] => 1.0 L-Tryptophan[c] + 1.0 H2O H2O[c] + 1.0 Glyceraldehyde 3-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 4.2.1.20
  • MetaNetX (MNX) Equation : MNXR104343
  • KEGG Reaction : R02722
  • BioCyc : META:TRYPSYN-RXN




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