Difference between revisions of "Pppi"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/UPP3MT2_AFE UPP3MT2_AFE] == * direction: ** REVERSIBLE * common name: ** uroporphyrinogen methyltra...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/IPMD IPMD] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-isopropylmalate dehydrogenase * Syn...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/UPP3MT2_AFE UPP3MT2_AFE] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/IPMD IPMD] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** uroporphyrinogen methyltransferase
+
** 3-isopropylmalate dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[uppg3]][c] '''+''' 1.0 [[amet]][c] '''<=>''' 1.0 [[h]][c] '''+''' 1.0 [[pre1]][c] '''+''' 1.0 [[ahcys]][c]
+
** 1.0 [[nad]][c] '''+''' 1.0 [[3c2hmp]][c] '''=>''' 1.0 [[nadh]][c] '''+''' 1.0 [[3c4mop]][c] '''+''' 1.0 [[h]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 Uroporphyrinogen III[c] '''+''' 1.0 S-Adenosyl-L-methionine[c] '''<=>''' 1.0 H+[c] '''+''' 1.0 Precorrin_1[c] '''+''' 1.0 S-Adenosyl-L-homocysteine[c]
+
** 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 3-Carboxy-2-hydroxy-4-methylpentanoate[c] '''=>''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 3-Carboxy-4-methyl-2-oxopentanoate[c] '''+''' 1.0 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS24115]]
+
* [[B471_RS0108545]]
 +
** [[pantograph]]-[[cljungdahlii]]
 +
** [[pantograph]]-[[bsubtilis]]
 
** [[pantograph]]-[[aferrooxidans]]
 
** [[pantograph]]-[[aferrooxidans]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[map01210]]: [http://www.genome.jp/dbget-bin/www_bget?map01210 map01210]
 +
** '''26''' reactions found over '''80''' reactions in the full pathway
 +
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 +
** '''471''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00660]]: [http://www.genome.jp/dbget-bin/www_bget?map00660 map00660]
 +
** '''5''' reactions found over '''21''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''212''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00290]]: [http://www.genome.jp/dbget-bin/www_bget?map00290 map00290]
 +
** '''15''' reactions found over '''49''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-cljungdahlii]]
−
*** [[aferrooxidans]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-bsubtilis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-aferrooxidans]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
+
* RHEA:
−
{{#set: common name=uroporphyrinogen methyltransferase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10892 10892]
−
{{#set: gene associated=B471_RS24115}}
+
* EC Number : 1.1.1.85
−
{{#set: in pathway=}}
+
* MetaNetX (MNX) Equation : MNXR100878
 +
* KEGG Reaction : R04426
 +
* BioCyc : META:3-ISOPROPYLMALDEHYDROG-RXN
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=3-isopropylmalate dehydrogenase}}
 +
{{#set: gene associated=B471_RS0108545}}
 +
{{#set: in pathway=map01210|map01100|map00660|map01110|map00290}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis|orthology-aferrooxidans}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=aferrooxidans}}
 

Revision as of 23:41, 20 March 2018

Reaction IPMD

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-isopropylmalate dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Nicotinamide adenine dinucleotide[c] + 1.0 3-Carboxy-2-hydroxy-4-methylpentanoate[c] => 1.0 Nicotinamide adenine dinucleotide - reduced[c] + 1.0 3-Carboxy-4-methyl-2-oxopentanoate[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 1.1.1.85
  • MetaNetX (MNX) Equation : MNXR100878
  • KEGG Reaction : R04426
  • BioCyc : META:3-ISOPROPYLMALDEHYDROG-RXN




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