Difference between revisions of "PCYT AFE"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/METTRS METTRS] == * direction: ** LEFT-TO-RIGHT * common name: ** Methionyl-tRNA synthetase * Synon...")
 
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710] == * common_name: ** Carbon fixation in photosynthetic organisms * Synonym(s): ==...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://bigg.ucsd.edu/universal/reactions/METTRS METTRS] ==
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710] ==
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* direction:
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* common_name:
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** LEFT-TO-RIGHT
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** Carbon fixation in photosynthetic organisms
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* common name:
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** Methionyl-tRNA synthetase
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''18''' reactions found over '''71''' reactions in the full pathway
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** 1.0 [[trnamet]][c] '''+''' 1.0 [[atp]][c] '''+''' 1.0 [[met__L]][c] '''=>''' 1.0 [[amp]][c] '''+''' 1.0 [[mettrna]][c] '''+''' 1.0 [[ppi]][c]
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* [[ASPTA]]
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* With common name(s):
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** 1 associated gene(s):
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** 1.0 TRNA(Met)[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 L-Methionine[c] '''=>''' 1.0 AMP C10H12N5O7P[c] '''+''' 1.0 L-Methionyl-tRNA (Met)[c] '''+''' 1.0 Diphosphate[c]
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*** [[B471_RS0109180]]
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** 3 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-cljungdahlii]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-bsubtilis]]
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* [[B471_RS0107380]]
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*** [[orthology-aferrooxidans]]
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** [[pantograph]]-[[cljungdahlii]]
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* [[FBA]]
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** [[pantograph]]-[[bsubtilis]]
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** 2 associated gene(s):
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== Pathways  ==
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*** [[B471_RS0118210]]
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* [[map00450]]: [http://www.genome.jp/dbget-bin/www_bget?map00450 map00450]
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*** [[B471_RS0101615]]
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** '''6''' reactions found over '''35''' reactions in the full pathway
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** 3 reconstruction source(s) associated:
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* [[map00970]]: [http://www.genome.jp/dbget-bin/www_bget?map00970 map00970]
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*** [[orthology-cljungdahlii]]
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** '''7''' reactions found over '''49''' reactions in the full pathway
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*** [[orthology-bsubtilis]]
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== Reconstruction information  ==
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*** [[orthology-aferrooxidans]]
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* [[orthology]]:
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* [[FBA2]]
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** [[pantograph]]:
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** 1 associated gene(s):
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*** [[cljungdahlii]]
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*** [[B471_RS0101615]]
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*** [[bsubtilis]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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* [[FBA3]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-reaction_to_add_delete]]
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* [[FBP]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[manual-reaction_to_add_delete]]
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* [[GAPD]]
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** 1 associated gene(s):
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*** [[B471_RS0119330]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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* [[GAPDi_nadp]]
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** 1 associated gene(s):
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*** [[B471_RS0119330]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-aferrooxidans]]
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* [[MDH]]
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** 1 associated gene(s):
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*** [[B471_RS0108660]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[ME1]]
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** 1 associated gene(s):
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*** [[B471_RS0101695]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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* [[ME2]]
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** 1 associated gene(s):
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*** [[B471_RS0108665]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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* [[PGK]]
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** 1 associated gene(s):
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*** [[B471_RS0119325]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-aferrooxidans]]
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* [[PPDK]]
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** 1 associated gene(s):
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*** [[B471_RS0118720]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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* [[PRUK]]
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** 1 associated gene(s):
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*** [[B471_RS23885]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-aferrooxidans]]
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* [[RPE]]
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** 1 associated gene(s):
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*** [[B471_RS23765]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[RPI]]
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** 2 associated gene(s):
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*** [[B471_RS0116940]]
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*** [[B471_RS0116500]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[TKT1]]
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** 1 associated gene(s):
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*** [[B471_RS0108290]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[TKT2]]
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** 1 associated gene(s):
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*** [[B471_RS0108290]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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* [[TPI]]
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** 1 associated gene(s):
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*** [[B471_RS0119320]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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== Reaction(s) not found ==
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* [http://bigg.ucsd.edu/universal/reactions/3SALATAi 3SALATAi]
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* [http://bigg.ucsd.edu/universal/reactions/3SALATAim 3SALATAim]
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* [http://bigg.ucsd.edu/universal/reactions/AATC AATC]
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* [http://bigg.ucsd.edu/universal/reactions/AATG AATG]
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* [http://bigg.ucsd.edu/universal/reactions/AATGm AATGm]
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* [http://bigg.ucsd.edu/universal/reactions/ALATA_L ALATA_L]
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* [http://bigg.ucsd.edu/universal/reactions/ALATA_Lm ALATA_Lm]
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* [http://bigg.ucsd.edu/universal/reactions/ASPATh ASPATh]
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* [http://bigg.ucsd.edu/universal/reactions/ASPTAm ASPTAm]
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* [http://bigg.ucsd.edu/universal/reactions/ASPTAp ASPTAp]
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* [http://bigg.ucsd.edu/universal/reactions/BFBP BFBP]
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* [http://bigg.ucsd.edu/universal/reactions/BFBPh BFBPh]
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* [http://bigg.ucsd.edu/universal/reactions/FBA3hi FBA3hi]
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* [http://bigg.ucsd.edu/universal/reactions/FBAf FBAf]
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* [http://bigg.ucsd.edu/universal/reactions/FBAh FBAh]
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* [http://bigg.ucsd.edu/universal/reactions/FBAm FBAm]
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* [http://bigg.ucsd.edu/universal/reactions/FPGPL FPGPL]
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* [http://bigg.ucsd.edu/universal/reactions/GAPDH_nadp_hi GAPDH_nadp_hi]
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* [http://bigg.ucsd.edu/universal/reactions/GAPDHf GAPDHf]
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* [http://bigg.ucsd.edu/universal/reactions/GAPDHh GAPDHh]
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* [http://bigg.ucsd.edu/universal/reactions/GAPDHm GAPDHm]
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* [http://bigg.ucsd.edu/universal/reactions/LCYSTAT LCYSTAT]
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* [http://bigg.ucsd.edu/universal/reactions/LCYSTATm LCYSTATm]
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* [http://bigg.ucsd.edu/universal/reactions/MDHC_nadp_hr MDHC_nadp_hr]
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* [http://bigg.ucsd.edu/universal/reactions/MDH_nadp_fi MDH_nadp_fi]
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* [http://bigg.ucsd.edu/universal/reactions/MDH_nadp_hi MDH_nadp_hi]
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* [http://bigg.ucsd.edu/universal/reactions/MDHf MDHf]
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* [http://bigg.ucsd.edu/universal/reactions/MDHh MDHh]
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* [http://bigg.ucsd.edu/universal/reactions/MDHi2 MDHi2]
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* [http://bigg.ucsd.edu/universal/reactions/MDHm MDHm]
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* [http://bigg.ucsd.edu/universal/reactions/MDHp MDHp]
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* [http://bigg.ucsd.edu/universal/reactions/MDHy MDHy]
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* [http://bigg.ucsd.edu/universal/reactions/ME1m ME1m]
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* [http://bigg.ucsd.edu/universal/reactions/ME2m ME2m]
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* [http://bigg.ucsd.edu/universal/reactions/PGKf PGKf]
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* [http://bigg.ucsd.edu/universal/reactions/PGKh PGKh]
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* [http://bigg.ucsd.edu/universal/reactions/PGKm PGKm]
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* [http://bigg.ucsd.edu/universal/reactions/PPC PPC]
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* [http://bigg.ucsd.edu/universal/reactions/PPCK PPCK]
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* [http://bigg.ucsd.edu/universal/reactions/PPCKm PPCKm]
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* [http://bigg.ucsd.edu/universal/reactions/PPDKh PPDKh]
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* [http://bigg.ucsd.edu/universal/reactions/PRUK_1 PRUK_1]
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* [http://bigg.ucsd.edu/universal/reactions/RBCh RBCh]
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* [http://bigg.ucsd.edu/universal/reactions/RBCh_1 RBCh_1]
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* [http://bigg.ucsd.edu/universal/reactions/RBPC RBPC]
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* [http://bigg.ucsd.edu/universal/reactions/RBPCh RBPCh]
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* [http://bigg.ucsd.edu/universal/reactions/RPEh RPEh]
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* [http://bigg.ucsd.edu/universal/reactions/RPIh RPIh]
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* [http://bigg.ucsd.edu/universal/reactions/SBP SBP]
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* [http://bigg.ucsd.edu/universal/reactions/SBP_1 SBP_1]
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* [http://bigg.ucsd.edu/universal/reactions/TKT1h TKT1h]
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* [http://bigg.ucsd.edu/universal/reactions/TKT2h TKT2h]
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* [http://bigg.ucsd.edu/universal/reactions/TPIh TPIh]
 
== External links  ==
 
== External links  ==
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* MetaNetX (MNX) Equation : MNXR101488
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{{#set: common_name=Carbon fixation in photosynthetic organisms}}
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* KEGG Reaction : R03659
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{{#set: reaction found=18}}
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* EC Number : 6.1.1.10
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{{#set: total reaction=71}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=25.0}}
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{{#set: common name=Methionyl-tRNA synthetase}}
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{{#set: gene associated=B471_RS0107380}}
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{{#set: in pathway=map00450|map00970}}
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−
{{#set: reconstruction category=orthology}}
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−
{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=cljungdahlii|bsubtilis}}
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Revision as of 00:49, 21 March 2018

Pathway map00710

  • common_name:
    • Carbon fixation in photosynthetic organisms
  • Synonym(s):

Reaction(s) found

18 reactions found over 71 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=PCYT_AFE&oldid=4388"