Difference between revisions of "METSR R1"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TRPS1 TRPS1] == * direction: ** LEFT-TO-RIGHT * common name: ** Tryptophan synthase (indoleglycerol...")
 
(Created page with "Category:Metabolite == Metabolite [http://bigg.ucsd.edu/universal/metabolites/orn orn] == * common name: ** Ornithine * Synonym(s): == Reaction(s) known to consume the co...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/TRPS1 TRPS1] ==
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== Metabolite [http://bigg.ucsd.edu/universal/metabolites/orn orn] ==
* direction:
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** LEFT-TO-RIGHT
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* common name:
 
* common name:
** Tryptophan synthase (indoleglycerol phosphate)
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** Ornithine
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
* With identifiers:
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* [[ORNDC]]
** 1.0 [[ser__L]][c] '''+''' 1.0 [[3ig3p]][c] '''=>''' 1.0 [[trp__L]][c] '''+''' 1.0 [[h2o]][c] '''+''' 1.0 [[g3p]][c]
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* [[ORNTA_CUT]]
* With common name(s):
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== Reaction(s) known to produce the compound ==
** 1.0 L-Serine[c] '''+''' 1.0 C'-(3-Indolyl)-glycerol 3-phosphate[c] '''=>''' 1.0 L-Tryptophan[c] '''+''' 1.0 H2O H2O[c] '''+''' 1.0 Glyceraldehyde 3-phosphate[c]
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* [[ACODA_CUT]]
 
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* [[ARGN]]
== Genes associated with this reaction  ==
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== Reaction(s) of unknown directionality ==
Genes have been associated with this reaction based on different elements listed below.
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* [[OCBT]]
* [[B471_RS0109425]]
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* [[ORNTAC]]
** [[pantograph]]-[[cljungdahlii]]
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** [[pantograph]]-[[bsubtilis]]
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* [[B471_RS0109430]]
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** [[pantograph]]-[[cljungdahlii]]
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** [[pantograph]]-[[bsubtilis]]
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== Pathways  ==
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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** '''472''' reactions found over '''2349''' reactions in the full pathway
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* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
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** '''212''' reactions found over '''1054''' reactions in the full pathway
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* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
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** '''78''' reactions found over '''228''' reactions in the full pathway
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* [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260]
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** '''24''' reactions found over '''133''' reactions in the full pathway
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* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
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** '''148''' reactions found over '''694''' reactions in the full pathway
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* [[map00400]]: [http://www.genome.jp/dbget-bin/www_bget?map00400 map00400]
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** '''17''' reactions found over '''59''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[cljungdahlii]]
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*** [[bsubtilis]]
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== External links  ==
 
== External links  ==
* RHEA:
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{{#set: common name=Ornithine}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10532 10532]
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{{#set: consumed by=ORNDC|ORNTA_CUT}}
* BioCyc : META:TRYPSYN-RXN
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{{#set: produced by=ACODA_CUT|ARGN}}
* MetaNetX (MNX) Equation : MNXR104343
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{{#set: reversible reaction associated=OCBT|ORNTAC}}
* KEGG Reaction : R02722
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* EC Number : 4.2.1.20
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Tryptophan synthase (indoleglycerol phosphate)}}
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{{#set: gene associated=B471_RS0109425|B471_RS0109430}}
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{{#set: in pathway=map01100|map01110|map01230|map00260|map01130|map00400}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=cljungdahlii|bsubtilis}}
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Revision as of 00:02, 21 March 2018

Metabolite orn

  • common name:
    • Ornithine
  • Synonym(s):

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links