Difference between revisions of "Map00720"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PLPS PLPS] == * direction: ** LEFT-TO-RIGHT * common name: ** Pyridoxal-5-phosphate synthase * Syno...")
(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00720 map00720] == * common_name: ** Carbon fixation pathways in prokaryotes * Synonym(s): == Reac...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/PLPS PLPS] ==
+
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00720 map00720] ==
−
* direction:
+
* common_name:
−
** LEFT-TO-RIGHT
+
** Carbon fixation pathways in prokaryotes
−
* common name:
+
−
** Pyridoxal-5-phosphate synthase
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''25''' reactions found over '''157''' reactions in the full pathway
−
** 1.0 [[gln__L]][c] '''+''' 1.0 [[g3p]][c] '''+''' 1.0 [[r5p]][c] '''=>''' 1.0 [[glu__L]][c] '''+''' 1.0 [[pydx5p]][c] '''+''' 3.0 [[h2o]][c] '''+''' 1.0 [[pi]][c] '''+''' 1.0 [[h]][c]
+
* [[ACACT1r]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1.0 L-Glutamine[c] '''+''' 1.0 Glyceraldehyde 3-phosphate[c] '''+''' 1.0 Alpha-D-Ribose 5-phosphate[c] '''=>''' 1.0 L-Glutamate[c] '''+''' 1.0 Pyridoxal 5'-phosphate[c] '''+''' 3.0 H2O H2O[c] '''+''' 1.0 Phosphate[c] '''+''' 1.0 H+[c]
+
*** [[B471_RS0105350]]
−
 
+
** 1 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[orthology-bsubtilis]]
−
Genes have been associated with this reaction based on different elements listed below.
+
* [[ACACT2r]]
−
* [[B471_RS0112245]]
+
** 2 associated gene(s):
−
** [[pantograph]]-[[cljungdahlii]]
+
*** [[B471_RS0110565]]
−
* [[B471_RS0112240]]
+
*** [[B471_RS0115615]]
−
** [[pantograph]]-[[cljungdahlii]]
+
** 1 reconstruction source(s) associated:
−
== Pathways  ==
+
*** [[orthology-bsubtilis]]
−
== Reconstruction information  ==
+
* [[ACACT3r]]
−
* Category: [[orthology]]
+
** 2 associated gene(s):
−
** Source: [[orthology-cljungdahlii]]
+
*** [[B471_RS0110565]]
−
*** Tool: [[pantograph]]
+
*** [[B471_RS0115615]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ACACT4r]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0110565]]
 +
*** [[B471_RS0115615]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ACACT7r]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0115615]]
 +
*** [[B471_RS0110565]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[ACCOAC]]
 +
** 4 associated gene(s):
 +
*** [[B471_RS0108400]]
 +
*** [[B471_RS0108915]]
 +
*** [[B471_RS0101860]]
 +
*** [[B471_RS0108925]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-aferrooxidans]]
 +
* [[ACONT]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0105965]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
* [[ACONTa]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0105965]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[ACONTb]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0105965]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[ACS]]
 +
** 3 associated gene(s):
 +
*** [[B471_RS0108000]]
 +
*** [[B471_RS0102585]]
 +
*** [[B471_RS0101560]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[ECOAH1]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[ECOAH9ir]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0115580]]
 +
*** [[B471_RS0110785]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[FTHFLi]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0106145]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[FUM]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0102435]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-aferrooxidans]]
 +
* [[HACD1]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[ICDHyr]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-reaction_to_add_delete]]
 +
* [[MACCOAT]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0115615]]
 +
*** [[B471_RS0110565]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[MDH]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0108660]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[MTHFC]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0101840]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[MTHFD]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0101840]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
* [[MTHFR3]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS21850]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[PC]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0103275]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
*** [[orthology-bsubtilis]]
 +
* [[PPCOAC]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0108915]]
 +
*** [[B471_RS0108400]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
* [[PPDK]]
 +
** 1 associated gene(s):
 +
*** [[B471_RS0118720]]
 +
** 1 reconstruction source(s) associated:
 +
*** [[orthology-cljungdahlii]]
 +
* [[SUCOAS]]
 +
** 2 associated gene(s):
 +
*** [[B471_RS0108670]]
 +
*** [[B471_RS0108675]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-bsubtilis]]
 +
*** [[orthology-aferrooxidans]]
 +
== Reaction(s) not found ==
 +
* [http://bigg.ucsd.edu/universal/reactions/3HOPCD 3HOPCD]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACCOAC_1 ACCOAC_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACCOACrm ACCOACrm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACCOAhi ACCOAhi]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACITL ACITL]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACKr ACKr]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACKrh ACKrh]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACKrm ACKrm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACONTm ACONTm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACONTx ACONTx]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACSm ACSm]
 +
* [http://bigg.ucsd.edu/universal/reactions/ACSp ACSp]
 +
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLm C2M26DCOAHLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLx C2M26DCOAHLx]
 +
* [http://bigg.ucsd.edu/universal/reactions/CITMCOALm CITMCOALm]
 +
* [http://bigg.ucsd.edu/universal/reactions/DHACOAH DHACOAH]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECH_3hivcoa ECH_3hivcoa]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH11p ECOAH11p]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12 ECOAH12]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12m ECOAH12m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1_1 ECOAH1_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1m ECOAH1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1x ECOAH1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/ECOAH9m ECOAH9m]
 +
* [http://bigg.ucsd.edu/universal/reactions/FRD FRD]
 +
* [http://bigg.ucsd.edu/universal/reactions/FRDcm FRDcm]
 +
* [http://bigg.ucsd.edu/universal/reactions/FRDm FRDm]
 +
* [http://bigg.ucsd.edu/universal/reactions/FTHFLmi FTHFLmi]
 +
* [http://bigg.ucsd.edu/universal/reactions/FUMm FUMm]
 +
* [http://bigg.ucsd.edu/universal/reactions/GHBDHy GHBDHy]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD10p HACD10p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1_1 HACD1_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1i HACD1i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1m HACD1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD1x HACD1x]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2 HACD2]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2_1 HACD2_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2i HACD2i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD2m HACD2m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3 HACD3]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3_1 HACD3_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3i HACD3i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD3m HACD3m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4 HACD4]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4i HACD4i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4m HACD4m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD4p HACD4p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5 HACD5]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5i HACD5i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5m HACD5m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD5p HACD5p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6 HACD6]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6i HACD6i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6m HACD6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD6p HACD6p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7 HACD7]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7i HACD7i]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7m HACD7m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD7p HACD7p]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD9 HACD9]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACD9m HACD9m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HACDp HACDp]
 +
* [http://bigg.ucsd.edu/universal/reactions/HADPCOADH3 HADPCOADH3]
 +
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp HBCO_nadp]
 +
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp_m HBCO_nadp_m]
 +
* [http://bigg.ucsd.edu/universal/reactions/HIBDkt HIBDkt]
 +
* [http://bigg.ucsd.edu/universal/reactions/HMNO HMNO]
 +
* [http://bigg.ucsd.edu/universal/reactions/ICDHhr ICDHhr]
 +
* [http://bigg.ucsd.edu/universal/reactions/ICDHym ICDHym]
 +
* [http://bigg.ucsd.edu/universal/reactions/ICDHyp ICDHyp]
 +
* [http://bigg.ucsd.edu/universal/reactions/ITCOALm ITCOALm]
 +
* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHf MDHf]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHh MDHh]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHi2 MDHi2]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHm MDHm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MDHp MDHp]
 +
* [http://bigg.ucsd.edu/universal/reactions/MME MME]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMEm MMEm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMM2 MMM2]
 +
* [http://bigg.ucsd.edu/universal/reactions/MMMm MMMm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MSAR MSAR]
 +
* [http://bigg.ucsd.edu/universal/reactions/MTHFC_1 MTHFC_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/MTHFCm MTHFCm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MTHFCm_1 MTHFCm_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/MTHFCx MTHFCx]
 +
* [http://bigg.ucsd.edu/universal/reactions/MTHFD_1 MTHFD_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/MTHFDm MTHFDm]
 +
* [http://bigg.ucsd.edu/universal/reactions/MTHFDm_1 MTHFDm_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/MTHFO MTHFO]
 +
* [http://bigg.ucsd.edu/universal/reactions/MTHFO_nadp MTHFO_nadp]
 +
* [http://bigg.ucsd.edu/universal/reactions/MTHFR2 MTHFR2]
 +
* [http://bigg.ucsd.edu/universal/reactions/MTHFR2_1 MTHFR2_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/MTHFR3_1 MTHFR3_1]
 +
* [http://bigg.ucsd.edu/universal/reactions/PCPPTh PCPPTh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PCPPTm PCPPTm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PCm PCm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPC PPC]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPCOACm PPCOACm]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPDKh PPDKh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PPS PPS]
 +
* [http://bigg.ucsd.edu/universal/reactions/PTA2 PTA2]
 +
* [http://bigg.ucsd.edu/universal/reactions/PTAr PTAr]
 +
* [http://bigg.ucsd.edu/universal/reactions/PTArh PTArh]
 +
* [http://bigg.ucsd.edu/universal/reactions/PTArm PTArm]
 +
* [http://bigg.ucsd.edu/universal/reactions/SSCOARy SSCOARy]
 +
* [http://bigg.ucsd.edu/universal/reactions/SUCD1 SUCD1]
 +
* [http://bigg.ucsd.edu/universal/reactions/SUCD1m SUCD1m]
 +
* [http://bigg.ucsd.edu/universal/reactions/SUCD2_u6m SUCD2_u6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/SUCD3_u6m SUCD3_u6m]
 +
* [http://bigg.ucsd.edu/universal/reactions/SUCDHh SUCDHh]
 +
* [http://bigg.ucsd.edu/universal/reactions/SUCLm SUCLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/SUCOASm SUCOASm]
 +
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLm T2M26DCOAHLm]
 +
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLx T2M26DCOAHLx]
 
== External links  ==
 
== External links  ==
−
* MetaNetX (MNX) Equation : MNXR103011
+
{{#set: common_name=Carbon fixation pathways in prokaryotes}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: reaction found=25}}
−
{{#set: common name=Pyridoxal-5-phosphate synthase}}
+
{{#set: total reaction=157}}
−
{{#set: gene associated=B471_RS0112245|B471_RS0112240}}
+
{{#set: completion rate=16.0}}
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction source=orthology-cljungdahlii}}
+
−
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 15:15, 21 March 2018

Pathway map00720

  • common_name:
    • Carbon fixation pathways in prokaryotes
  • Synonym(s):

Reaction(s) found

25 reactions found over 157 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=Map00720&oldid=6485"