Difference between revisions of "MDDCP3ex"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/IG3PS IG3PS] == * direction: ** LEFT-TO-RIGHT * common name: ** Imidazole-glycerol-3-phosphate synt...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MDDCP3ex MDDCP3ex] == * direction: ** LEFT-TO-RIGHT * common name: ** Murein D,D-carboxypeptidase (...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/IG3PS IG3PS] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/MDDCP3ex MDDCP3ex] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Imidazole-glycerol-3-phosphate synthase
+
** Murein D,D-carboxypeptidase (murein5p5p) (periplasm)
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[gln__L]][c] '''+''' 1.0 [[prlp]][c] '''=>''' 1.0 [[glu__L]][c] '''+''' 1.0 [[eig3p]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[aicar]][c]
+
** 1.0 [[h2o]][e] '''+''' 1.0 [[murein5p5p]][e] '''=>''' 1.0 [[ala__D]][e] '''+''' 1.0 [[murein5p4p]][e]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 L-Glutamine[c] '''+''' 1.0 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-1-(5-phosphoribosyl)imidazole-4-carboxamide[c] '''=>''' 1.0 L-Glutamate[c] '''+''' 1.0 D-erythro-1-(Imidazol-4-yl)glycerol 3-phosphate[c] '''+''' 1.0 H+[c] '''+''' 1.0 5-Amino-1-(5-Phospho-D-ribosyl)imidazole-4-carboxamide[c]
+
** 1.0 H2O H2O[e] '''+''' 1.0 Two linked disacharide pentapeptide murein units (uncrosslinked, middle of chain)[e] '''=>''' 1.0 D-Alanine[e] '''+''' 1.0 Two linked disacharide pentapeptide and tetrapeptide murein units (uncrosslinked, middle of chain)[e]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0118350]]
+
* Gene: [[B471_RS0101180]]
−
** [[pantograph]]-[[cljungdahlii]]
+
** Source: [[orthology-cljungdahlii]]
−
** [[pantograph]]-[[aferrooxidans]]
+
−
* [[B471_RS23525]]
+
−
** [[pantograph]]-[[cljungdahlii]]
+
−
** [[pantograph]]-[[aferrooxidans]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
+
* [[map00550]]: [http://www.genome.jp/dbget-bin/www_bget?map00550 map00550]
−
** '''471''' reactions found over '''2349''' reactions in the full pathway
+
** '''14''' reactions found over '''27''' reactions in the full pathway
−
* [[map00340]]: [http://www.genome.jp/dbget-bin/www_bget?map00340 map00340]
+
−
** '''13''' reactions found over '''90''' reactions in the full pathway
+
−
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
+
−
** '''212''' reactions found over '''1054''' reactions in the full pathway
+
−
* [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230]
+
−
** '''78''' reactions found over '''228''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-cljungdahlii]]
 
** Source: [[orthology-cljungdahlii]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-aferrooxidans]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* MetaNetX (MNX) Equation : MNXR101431
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24793 24793]
+
* EC Number : 3.4.16.4
−
* EC Number : 2.4.2.-
+
−
* MetaNetX (MNX) Equation : MNXR100811
+
−
* KEGG Reaction : R04558
+
−
* BioCyc : META:GLUTAMIDOTRANS-RXN
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Imidazole-glycerol-3-phosphate synthase}}
+
{{#set: common name=Murein D,D-carboxypeptidase (murein5p5p) (periplasm)}}
−
{{#set: gene associated=B471_RS0118350|B471_RS23525}}
+
{{#set: gene associated=B471_RS0101180}}
−
{{#set: in pathway=map01100|map00340|map01110|map01230}}
+
{{#set: in pathway=map00550}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=orthology-cljungdahlii|orthology-aferrooxidans}}
+
{{#set: reconstruction source=orthology-cljungdahlii}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:37, 21 March 2018

Reaction MDDCP3ex

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Murein D,D-carboxypeptidase (murein5p5p) (periplasm)
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H2O H2O[e] + 1.0 Two linked disacharide pentapeptide murein units (uncrosslinked, middle of chain)[e] => 1.0 D-Alanine[e] + 1.0 Two linked disacharide pentapeptide and tetrapeptide murein units (uncrosslinked, middle of chain)[e]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • MetaNetX (MNX) Equation : MNXR101431
  • EC Number : 3.4.16.4




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