Difference between revisions of "MDH"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/TMPK TMPK] == * direction: ** LEFT-TO-RIGHT * common name: ** Thiamine-phosphate kinase * Synonym(s...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/MDH MDH] == * direction: ** REVERSIBLE * common name: ** Malate dehydrogenase * Synonym(s): == Rea...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/TMPK TMPK] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/MDH MDH] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Thiamine-phosphate kinase
+
** Malate dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[atp]][c] '''+''' 1.0 [[thmmp]][c] '''=>''' 1.0 [[adp]][c] '''+''' 1.0 [[thmpp]][c]
+
** 1.0 [[nad]][c] '''+''' 1.0 [[mal__L]][c] '''<=>''' 1.0 [[h]][c] '''+''' 1.0 [[oaa]][c] '''+''' 1.0 [[nadh]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 Thiamin monophosphate[c] '''=>''' 1.0 ADP C10H12N5O10P2[c] '''+''' 1.0 Thiamine diphosphate[c]
+
** 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 L-Malate[c] '''<=>''' 1.0 H+[c] '''+''' 1.0 Oxaloacetate[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[B471_RS0105400]]
+
* Gene: [[B471_RS0108660]]
−
** [[pantograph]]-[[bsubtilis]]
+
** Source: [[orthology-bsubtilis]]
−
** [[pantograph]]-[[aferrooxidans]]
+
** Source: [[orthology-aferrooxidans]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[map00730]]: [http://www.genome.jp/dbget-bin/www_bget?map00730 map00730]
 
−
** '''8''' reactions found over '''24''' reactions in the full pathway
 
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
** '''471''' reactions found over '''2349''' reactions in the full pathway
 
** '''471''' reactions found over '''2349''' reactions in the full pathway
 +
* [[map00630]]: [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630]
 +
** '''23''' reactions found over '''129''' reactions in the full pathway
 +
* [[map00720]]: [http://www.genome.jp/dbget-bin/www_bget?map00720 map00720]
 +
** '''25''' reactions found over '''157''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''101''' reactions found over '''715''' reactions in the full pathway
 +
* [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270]
 +
** '''24''' reactions found over '''135''' reactions in the full pathway
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''51''' reactions found over '''220''' reactions in the full pathway
 +
* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
 +
** '''18''' reactions found over '''71''' reactions in the full pathway
 +
* [[map00680]]: [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680]
 +
** '''14''' reactions found over '''75''' reactions in the full pathway
 +
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
 +
** '''212''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
 +
** '''22''' reactions found over '''163''' reactions in the full pathway
 +
* [[map00020]]: [http://www.genome.jp/dbget-bin/www_bget?map00020 map00020]
 +
** '''10''' reactions found over '''70''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''148''' reactions found over '''694''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
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*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* EC Number : 1.1.1.299
 +
* BioCyc : META:MALATE-DEH-RXN
 +
* MetaNetX (MNX) Equation : MNXR101439
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15913 15913]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21432 21432]
−
* EC Number : 2.7.4.16
+
* Reactome : REACT_R-ATH-70979
−
* MetaNetX (MNX) Equation : MNXR104907
+
* KEGG Reaction : R00342
−
* KEGG Reaction : R00617
+
{{#set: direction=REVERSIBLE}}
−
* BioCyc : META:THI-P-KIN-RXN
+
{{#set: common name=Malate dehydrogenase}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: gene associated=B471_RS0108660}}
−
{{#set: common name=Thiamine-phosphate kinase}}
+
{{#set: in pathway=map01100|map00630|map00720|map01120|map00270|map01200|map00710|map00680|map01110|map00620|map00020|map01130}}
−
{{#set: gene associated=B471_RS0105400}}
+
−
{{#set: in pathway=map00730|map01100}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction source=orthology-bsubtilis|orthology-aferrooxidans}}
 
{{#set: reconstruction source=orthology-bsubtilis|orthology-aferrooxidans}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:37, 21 March 2018

Reaction MDH

  • direction:
    • REVERSIBLE
  • common name:
    • Malate dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Nicotinamide adenine dinucleotide[c] + 1.0 L-Malate[c] <=> 1.0 H+[c] + 1.0 Oxaloacetate[c] + 1.0 Nicotinamide adenine dinucleotide - reduced[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 1.1.1.299
  • BioCyc : META:MALATE-DEH-RXN
  • MetaNetX (MNX) Equation : MNXR101439
  • RHEA:
  • Reactome : REACT_R-ATH-70979
  • KEGG Reaction : R00342




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