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|
Line 1: |
Line 1: |
− | [[Category:Pathway]] | + | [[Category:Reaction]] |
− | == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00630 map00630] == | + | == Reaction [http://bigg.ucsd.edu/universal/reactions/EX_galur EX_galur] == |
− | * common_name: | + | * direction: |
− | ** Glyoxylate and dicarboxylate metabolism | + | ** LEFT-TO-RIGHT |
| * Synonym(s): | | * Synonym(s): |
| | | |
− | == Reaction(s) found == | + | == Reaction Formula == |
− | '''23''' reactions found over '''129''' reactions in the full pathway
| + | * With identifiers: |
− | * [[ACACT1r]] | + | ** 1.0 [[galur]][e] '''=>''' |
− | ** 1 associated gene(s):
| + | * With common name(s): |
− | *** [[B471_RS0105350]]
| + | ** 1.0 D-Galacturonate[e] '''=>''' |
− | ** 1 reconstruction source(s) associated: | + | |
− | *** [[orthology-bsubtilis]]
| + | == Genes associated with this reaction == |
− | * [[ACACT2r]]
| + | == Pathways == |
− | ** 2 associated gene(s): | + | == Reconstruction information == |
− | *** [[B471_RS0110565]]
| + | * Category: [[manual]] |
− | *** [[B471_RS0115615]]
| + | ** Source: [[manual-missing_rxn_creator]] |
− | ** 1 reconstruction source(s) associated: | + | *** Comment: [[reaction from orthology templates not found by pantograph]] |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[ACACT3r]]
| + | |
− | ** 2 associated gene(s):
| + | |
− | *** [[B471_RS0110565]]
| + | |
− | *** [[B471_RS0115615]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[ACACT4r]]
| + | |
− | ** 2 associated gene(s):
| + | |
− | *** [[B471_RS0110565]]
| + | |
− | *** [[B471_RS0115615]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[ACACT7r]]
| + | |
− | ** 2 associated gene(s):
| + | |
− | *** [[B471_RS0115615]]
| + | |
− | *** [[B471_RS0110565]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[ACONT]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0105965]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[ACONTa]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0105965]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[ACONTb]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0105965]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[CS]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0109275]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[ECOAH1]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[FTHFD]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0103250]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[GCALDD]]
| + | |
− | ** 2 associated gene(s): | + | |
− | *** [[B471_RS0115620]]
| + | |
− | *** [[B471_RS0119455]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[GHMT2r]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0101930]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[GLNS]]
| + | |
− | ** 4 associated gene(s):
| + | |
− | *** [[B471_RS0118305]]
| + | |
− | *** [[B471_RS0113160]]
| + | |
− | *** [[B471_RS0117560]]
| + | |
− | *** [[B471_RS0113155]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[GLXCL]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[GLYCK]] | + | |
− | ** 1 associated gene(s): | + | |
− | *** [[B471_RS21900]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[GLYCTO1]]
| + | |
− | ** 7 associated gene(s):
| + | |
− | *** [[B471_RS0100385]]
| + | |
− | *** [[B471_RS0103425]]
| + | |
− | *** [[B471_RS0100380]]
| + | |
− | *** [[B471_RS21575]]
| + | |
− | *** [[B471_RS0100405]]
| + | |
− | *** [[B471_RS21905]]
| + | |
− | *** [[B471_RS23835]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[MACCOAT]]
| + | |
− | ** 2 associated gene(s):
| + | |
− | *** [[B471_RS0115615]]
| + | |
− | *** [[B471_RS0110565]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[MALS]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[MDH]] | + | |
− | ** 1 associated gene(s): | + | |
− | *** [[B471_RS0108660]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[PGLYCP]]
| + | |
− | ** 3 associated gene(s):
| + | |
− | *** [[B471_RS0117485]]
| + | |
− | *** [[B471_RS21140]]
| + | |
− | *** [[B471_RS0117840]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[PPCOAC]]
| + | |
− | ** 2 associated gene(s):
| + | |
− | *** [[B471_RS0108915]]
| + | |
− | *** [[B471_RS0108400]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[TRSARr]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0100390]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | == Reaction(s) not found ==
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/3HBCDm 3HBCDm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AACOAR_syn AACOAR_syn]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACONTm ACONTm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACONTx ACONTx]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ALCD21_D ALCD21_D]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CAT CAT]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CAT2p CAT2p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CATm CATm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CATp CATp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CSm CSm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CSp CSp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DDPGA DDPGA]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DDPGAm DDPGAm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH1_1 ECOAH1_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH1m ECOAH1m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH1x ECOAH1x]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FCOAH FCOAH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FCOAH2 FCOAH2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FDH FDH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FDH2 FDH2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FDH3 FDH3]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FDH5r2pp FDH5r2pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FDNG FDNG]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FKYNH FKYNH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FORA FORA]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FORAMD FORAMD]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/FORAMDx FORAMDx]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GALh GALh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GALm GALm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GCALDDm GCALDDm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GHMT2rm GHMT2rm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLNSP1 GLNSP1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLNSP2 GLNSP2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLNSP3 GLNSP3]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLXO2p GLXO2p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLXO3r GLXO3r]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLYCDH_1 GLYCDH_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLYCK2 GLYCK2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLYCLTDx GLYCLTDx]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLYCLTDy GLYCLTDy]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLYCLTDym GLYCLTDym]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLYCTO1p GLYCTO1p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLYPT GLYPT]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLYTA GLYTA]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLYTA_1 GLYTA_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HBCHLR HBCHLR]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HOXPRm HOXPRm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HPYRDC HPYRDC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HPYRDCm HPYRDCm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HPYRI HPYRI]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HPYRRx HPYRRx]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HPYRRy HPYRRy]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ICL ICL]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ICL_1 ICL_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LALDO2x LALDO2x]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LCARR LCARR]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LCARS LCARS]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MALSh MALSh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MALSm MALSm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MALSp MALSp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHf MDHf]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHh MDHh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHi2 MDHi2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHm MDHm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MDHp MDHp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MME MME]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MMEm MMEm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MMM2 MMM2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MMMm MMMm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/NFORGLUAH NFORGLUAH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/OXACOAL OXACOAL]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/OXADC OXADC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/OXADCm OXADCm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/OXCDC OXCDC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PGLYCPh PGLYCPh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PGLYCPx PGLYCPx]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PPCOACm PPCOACm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RBCh RBCh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RBCh_1 RBCh_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RBPC RBPC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RBPCh RBPCh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RHACOAR100 RHACOAR100]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RHACOAR140 RHACOAR140]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RHACOAR60 RHACOAR60]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/RHACOAR80 RHACOAR80]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SGAT SGAT]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SPT_syn SPT_syn]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/TARTD TARTD]
| + | |
| == External links == | | == External links == |
− | {{#set: common_name=Glyoxylate and dicarboxylate metabolism}} | + | {{#set: direction=LEFT-TO-RIGHT}} |
− | {{#set: reaction found=23}} | + | {{#set: in pathway=}} |
− | {{#set: total reaction=129}} | + | {{#set: reconstruction category=manual}} |
− | {{#set: completion rate=18.0}} | + | {{#set: reconstruction source=manual-missing_rxn_creator}} |
| + | {{#set: reconstruction comment=reaction from orthology templates not found by pantograph}} |