Difference between revisions of "PRAIS"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map01210 map01210] == * common_name: ** 2-Oxocarboxylic acid metabolism * Synonym(s): == Reaction(s)...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PRAIS PRAIS] == * direction: ** LEFT-TO-RIGHT * common name: ** Phosphoribosylaminoimidazole syntha...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map01210 map01210] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/PRAIS PRAIS] ==
−
* common_name:
+
* direction:
−
** 2-Oxocarboxylic acid metabolism
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** LEFT-TO-RIGHT
 +
* common name:
 +
** Phosphoribosylaminoimidazole synthase
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
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== Reaction Formula ==
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'''26''' reactions found over '''80''' reactions in the full pathway
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* With identifiers:
−
* [[ACGK]]
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** 1.0 [[fpram]][c] '''+''' 1.0 [[atp]][c] '''=>''' 1.0 [[air]][c] '''+''' 1.0 [[pi]][c] '''+''' 2.0 [[h]][c] '''+''' 1.0 [[adp]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[B471_RS23385]]
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** 1.0 2-(Formamido)-N1-(5-phospho-D-ribosyl)acetamidine[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''=>''' 1.0 5-amino-1-(5-phospho-D-ribosyl)imidazole[c] '''+''' 1.0 Phosphate[c] '''+''' 2.0 H+[c] '''+''' 1.0 ADP C10H12N5O10P2[c]
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*** [[B471_RS21960]]
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** 3 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-cljungdahlii]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-bsubtilis]]
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* Gene: [[B471_RS0105255]]
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*** [[orthology-aferrooxidans]]
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** Source: [[orthology-cljungdahlii]]
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* [[ACGS]]
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** Source: [[orthology-aferrooxidans]]
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** 3 associated gene(s):
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== Pathways  ==
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*** [[B471_RS0117540]]
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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*** [[B471_RS21960]]
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** '''471''' reactions found over '''2349''' reactions in the full pathway
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*** [[B471_RS23385]]
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* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
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** 3 reconstruction source(s) associated:
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** '''148''' reactions found over '''694''' reactions in the full pathway
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*** [[orthology-cljungdahlii]]
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* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
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*** [[orthology-bsubtilis]]
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** '''212''' reactions found over '''1054''' reactions in the full pathway
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*** [[orthology-aferrooxidans]]
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* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
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* [[ACHBS]]
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** '''64''' reactions found over '''298''' reactions in the full pathway
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** 0 associated gene:
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== Reconstruction information  ==
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** 1 reconstruction source(s) associated:
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* Category: [[orthology]]
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*** [[manual-reaction_to_add_delete]]
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** Source: [[orthology-cljungdahlii]]
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* [[ACLS]]
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*** Tool: [[pantograph]]
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** 1 associated gene(s):
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** Source: [[orthology-aferrooxidans]]
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*** [[B471_RS0108550]]
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*** Tool: [[pantograph]]
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** 1 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
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−
* [[ACONT]]
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−
** 1 associated gene(s):
+
−
*** [[B471_RS0105965]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
* [[ACONTa]]
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−
** 1 associated gene(s):
+
−
*** [[B471_RS0105965]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[ACONTb]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0105965]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[ACOTA]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0117530]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[AGPR]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0117545]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
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−
* [[ASAD]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0100620]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
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−
* [[ASPK]]
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−
** 2 associated gene(s):
+
−
*** [[B471_RS0100615]]
+
−
*** [[B471_RS0107565]]
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−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
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−
* [[ASPTA]]
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** 1 associated gene(s):
+
−
*** [[B471_RS0109180]]
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−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
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−
*** [[orthology-aferrooxidans]]
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−
* [[CS]]
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−
** 1 associated gene(s):
+
−
*** [[B471_RS0109275]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
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−
* [[DHAD1]]
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−
** 1 associated gene(s):
+
−
*** [[B471_RS0117830]]
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−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
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−
* [[DHAD2]]
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−
** 1 associated gene(s):
+
−
*** [[B471_RS0117830]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[ICDHyr]]
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−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
+
−
* [[ILETA]]
+
−
** 4 associated gene(s):
+
−
*** [[B471_RS0110105]]
+
−
*** [[B471_RS0102340]]
+
−
*** [[B471_RS0106435]]
+
−
*** [[B471_RS0109150]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[IPMD]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0108545]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[IPPMIa]]
+
−
** 3 associated gene(s):
+
−
*** [[B471_RS0105525]]
+
−
*** [[B471_RS0105965]]
+
−
*** [[B471_RS0105520]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
* [[IPPMIb]]
+
−
** 3 associated gene(s):
+
−
*** [[B471_RS0105965]]
+
−
*** [[B471_RS0105520]]
+
−
*** [[B471_RS0105525]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
* [[IPPS]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS21670]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
* [[LEUTA]]
+
−
** 4 associated gene(s):
+
−
*** [[B471_RS0106435]]
+
−
*** [[B471_RS0110105]]
+
−
*** [[B471_RS0102340]]
+
−
*** [[B471_RS0109150]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[OMCDC]]
+
−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
+
−
* [[ORNTAC]]
+
−
** 3 associated gene(s):
+
−
*** [[B471_RS23385]]
+
−
*** [[B471_RS0117540]]
+
−
*** [[B471_RS21960]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[PHETA1]]
+
−
** 3 associated gene(s):
+
−
*** [[B471_RS0109180]]
+
−
*** [[B471_RS23525]]
+
−
*** [[B471_RS0118315]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[VALTA]]
+
−
** 4 associated gene(s):
+
−
*** [[B471_RS0109150]]
+
−
*** [[B471_RS0110105]]
+
−
*** [[B471_RS0106435]]
+
−
*** [[B471_RS0102340]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
== Reaction(s) not found ==
+
−
* [http://bigg.ucsd.edu/universal/reactions/AATA AATA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACGKm ACGKm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACGSm ACGSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACHBSm ACHBSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACLSm ACLSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACODA ACODA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACONTm ACONTm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACONTx ACONTx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACOTAim ACOTAim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AGPRim AGPRim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALATA_L ALATA_L]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ALATA_Lm ALATA_Lm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASADH ASADH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASPATh ASPATh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASPK_1 ASPK_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASPTAm ASPTAm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASPTAp ASPTAp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BCTA_glu_h BCTA_glu_h]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BCTA_val_h BCTA_val_h]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BCTAh BCTAh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CH2ACH CH2ACH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CH3ACH CH3ACH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CITCIb CITCIb]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CSm CSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CSp CSp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DABAAT DABAAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DHAD1m DHAD1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DHAD2m DHAD2m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DHAD_3mob_h DHAD_3mob_h]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DHADh DHADh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HICITDm HICITDm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ICDHhr ICDHhr]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ICDHx ICDHx]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ICDHxm ICDHxm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ICDHym ICDHym]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ICDHyp ICDHyp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ILETAm ILETAm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/IPPSh IPPSh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/IPPSm IPPSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/KARI KARI]
+
−
* [http://bigg.ucsd.edu/universal/reactions/KARI_23dhmb KARI_23dhmb]
+
−
* [http://bigg.ucsd.edu/universal/reactions/KARI_23dhmp KARI_23dhmp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/KARI_3hmoa KARI_3hmoa]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LEUTAi LEUTAi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LEUTAm LEUTAm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/OMCDCm OMCDCm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ORNTACim ORNTACim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/OXAGm OXAGm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PHETA1m PHETA1m]
+
−
* [http://bigg.ucsd.edu/universal/reactions/POATh POATh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/PPATDh PPATDh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RH2CD RH2CD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RH3CD RH3CD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/VALTAim VALTAim]
+
 
== External links  ==
 
== External links  ==
−
{{#set: common_name=2-Oxocarboxylic acid metabolism}}
+
* RHEA:
−
{{#set: reaction found=26}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23032 23032]
−
{{#set: total reaction=80}}
+
* MetaNetX (MNX) Equation : MNXR103157
−
{{#set: completion rate=33.0}}
+
* EC Number : 6.3.3.1
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Phosphoribosylaminoimidazole synthase}}
 +
{{#set: gene associated=B471_RS0105255}}
 +
{{#set: in pathway=map01100|map01130|map01110|map00230}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-cljungdahlii|orthology-aferrooxidans}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:37, 21 March 2018

Reaction PRAIS

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Phosphoribosylaminoimidazole synthase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 2-(Formamido)-N1-(5-phospho-D-ribosyl)acetamidine[c] + 1.0 ATP C10H12N5O13P3[c] => 1.0 5-amino-1-(5-phospho-D-ribosyl)imidazole[c] + 1.0 Phosphate[c] + 2.0 H+[c] + 1.0 ADP C10H12N5O10P2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • MetaNetX (MNX) Equation : MNXR103157
  • EC Number : 6.3.3.1




Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=PRAIS&oldid=7474"