|
|
Line 1: |
Line 1: |
− | [[Category:Pathway]] | + | [[Category:Reaction]] |
− | == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330] == | + | == Reaction [http://bigg.ucsd.edu/universal/reactions/PSSA180 PSSA180] == |
− | * common_name: | + | * direction: |
− | ** Arginine and proline metabolism | + | ** LEFT-TO-RIGHT |
| + | * common name: |
| + | ** Phosphatidylserine syntase (n-C18:0) |
| * Synonym(s): | | * Synonym(s): |
| | | |
− | == Reaction(s) found == | + | == Reaction Formula == |
− | '''19''' reactions found over '''149''' reactions in the full pathway
| + | * With identifiers: |
− | * [[ABUTD]] | + | ** 1.0 [[cdpdodecg]][c] '''+''' 1.0 [[ser__L]][c] '''=>''' 1.0 [[cmp]][c] '''+''' 1.0 [[ps180]][c] '''+''' 1.0 [[h]][c] |
− | ** 2 associated gene(s):
| + | * With common name(s): |
− | *** [[B471_RS0119455]]
| + | ** 1.0 CDP-1,2-dioctadecanoylglycerol[c] '''+''' 1.0 L-Serine[c] '''=>''' 1.0 CMP C9H12N3O8P[c] '''+''' 1.0 Phosphatidylserine (dioctadecanoyl, n-C18:0)[c] '''+''' 1.0 H+[c] |
− | *** [[B471_RS0115620]]
| + | |
− | ** 1 reconstruction source(s) associated: | + | == Genes associated with this reaction == |
− | *** [[orthology-bsubtilis]]
| + | == Pathways == |
− | * [[ADMDC]]
| + | * [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100] |
− | ** 1 associated gene(s):
| + | ** '''471''' reactions found over '''2349''' reactions in the full pathway |
− | *** [[B471_RS0100905]]
| + | * [[map00564]]: [http://www.genome.jp/dbget-bin/www_bget?map00564 map00564] |
− | ** 3 reconstruction source(s) associated:
| + | ** '''36''' reactions found over '''134''' reactions in the full pathway |
− | *** [[orthology-cljungdahlii]]
| + | * [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110] |
− | *** [[orthology-bsubtilis]]
| + | ** '''212''' reactions found over '''1054''' reactions in the full pathway |
− | *** [[orthology-aferrooxidans]]
| + | * [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260] |
− | * [[AGMT]]
| + | ** '''24''' reactions found over '''133''' reactions in the full pathway |
− | ** 1 associated gene(s):
| + | == Reconstruction information == |
− | *** [[B471_RS0113670]]
| + | * Category: [[manual]] |
− | ** 1 reconstruction source(s) associated:
| + | ** Source: [[manual-reaction_to_add_delete]] |
− | *** [[orthology-bsubtilis]]
| + | *** Comment: [[reaction added from literature evidence or biological expertise]] |
− | * [[ARGDC]]
| + | |
− | ** 2 associated gene(s):
| + | |
− | *** [[B471_RS21410]]
| + | |
− | *** [[B471_RS21240]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[ARGN]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0119575]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | * [[ASPTA]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0109180]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]] | + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[CSND]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0110635]]
| + | |
− | ** 1 reconstruction source(s) associated: | + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | * [[DALAOX]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0117705]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[G5SADs]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[G5SD]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0101260]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[GLU5K]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0101265]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[MCSNAH]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0110870]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[ORNDC]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS21410]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | * [[P5CD]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0100095]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[P5CR]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS21630]]
| + | |
− | ** 3 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[PRO1x]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0119645]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[PTRCTA]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0110025]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | * [[SPMS]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0113665]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[SPRMS]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0113665]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | == Reaction(s) not found == | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/3HXKYNOXDA 3HXKYNOXDA] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/3MOXTYROX 3MOXTYROX]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/3SALATAi 3SALATAi]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/3SALATAim 3SALATAim]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/41R1H2MAE12BOOX 41R1H2MAE12BOOX]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/41R2A1H12BOOX 41R2A1H12BOOX] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/4ABUTD 4ABUTD] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/4HGLSD 4HGLSD]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/4HGLSDm 4HGLSDm] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOX 5HOXINDACTOX]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/5HOXINDACTOXm 5HOXINDACTOXm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/5HOXINOXDA 5HOXINOXDA]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/5HXKYNOXDA 5HXKYNOXDA]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AABHH AABHH] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AABTN AABTN] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AATC AATC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AATG AATG] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AATGm AATGm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ABOR ABOR]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ABUTDm ABUTDm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AGDI AGDI]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AGDIn AGDIn] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AGMDA AGMDA] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AGMTm AGMTm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ALATA_D ALATA_D] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ALDD20x ALDD20x]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ALDD20xm ALDD20xm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ALDH ALDH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AMID AMID]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AMID2 AMID2] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AMID3 AMID3] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AMID4 AMID4]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AMID5 AMID5]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AMID_1 AMID_1] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AMPTASECG AMPTASECG]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AMPTASECGe AMPTASECGe]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/APAPTm APAPTm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/APCS APCS] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/APRTO2 APRTO2] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ARGDCm ARGDCm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ARGDCpp ARGDCpp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ARGNm ARGNm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ARUH ARUH] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ASAPT ASAPT] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ASPATh ASPATh] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ASPTAm ASPTAm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ASPTAp ASPTAp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AST AST]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CK CK]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CKc CKc]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CMPA CMPA]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CRTNh CRTNh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CRTNsyn CRTNsyn]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CSPMDDC CSPMDDC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CSPMDDH CSPMDDH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DALAOXx DALAOXx]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DARGOp DARGOp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DDMCITALOR DDMCITALOR]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DIAT DIAT]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DMCITALOR DMCITALOR]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DORNOp DORNOp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DPROOp DPROOp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/EHGLAT EHGLAT]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/EHGLATm EHGLATm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/EHGLATp EHGLATp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G5DHx G5DHx]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G5SADrm G5SADrm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G5SD2 G5SD2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G5SDym G5SDym]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GACMTRc GACMTRc]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GDBTALDH GDBTALDH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GGGABADr GGGABADr]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GGGABAH GGGABAH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GGPTRCS GGPTRCS]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLACO GLACO]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLACOm GLACOm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLU5Km GLU5Km]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLYALDDr GLYALDDr]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLYAMDTRc GLYAMDTRc]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GLYOp GLYOp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GUDBUTNAH GUDBUTNAH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HPROa HPROa]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HPROb HPROb]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HPROx HPROx]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HPROxm HPROxm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HPROym HPROym]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/IMACTD IMACTD]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/IMACTD_m IMACTD_m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LALGP LALGP]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LCYSTAT LCYSTAT]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LCYSTATm LCYSTATm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MAOLNOR MAOLNOR]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/NABTNO NABTNO]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/NABTNOm NABTNOm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/NOPD NOPD]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/NOS NOS]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/NOS1 NOS1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/NOS2 NOS2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/NOS2_1 NOS2_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/OARGDC OARGDC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ORDCh ORDCh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ORNCD ORNCD]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ORNTA ORNTA]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ORNTArm ORNTArm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/P5CDm P5CDm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/P5CRm P5CRm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/P5CRx P5CRx]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/P5CRxm P5CRxm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PHCD PHCD]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PHCDm PHCDm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PHCHGS PHCHGS]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PHCHGSm PHCHGSm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/POLYAO2 POLYAO2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/POLYAO3 POLYAO3]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PRO1xm PRO1xm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PRO1y PRO1y]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PROAKGOX1 PROAKGOX1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PROAKGOX1r PROAKGOX1r]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PROD2 PROD2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PROD2m PROD2m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PTRCAT1 PTRCAT1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PUTA3 PUTA3]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PYLALDOX PYLALDOX]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PYLALDOXm PYLALDOXm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SADH SADH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SGDS SGDS]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SGSAD SGSAD]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SOTA SOTA]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SPMDAT1 SPMDAT1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SPMDAT2 SPMDAT2]
| + | |
| == External links == | | == External links == |
− | {{#set: common_name=Arginine and proline metabolism}} | + | * MetaNetX (MNX) Equation : MNXR103271 |
− | {{#set: reaction found=19}} | + | * EC Number : 2.7.8.8 |
− | {{#set: total reaction=149}} | + | {{#set: direction=LEFT-TO-RIGHT}} |
− | {{#set: completion rate=13.0}} | + | {{#set: common name=Phosphatidylserine syntase (n-C18:0)}} |
| + | {{#set: in pathway=map01100|map00564|map01110|map00260}} |
| + | {{#set: reconstruction category=manual}} |
| + | {{#set: reconstruction source=manual-reaction_to_add_delete}} |
| + | {{#set: reconstruction comment=reaction added from literature evidence or biological expertise}} |