Difference between revisions of "EX spmd"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270] == * common_name: ** Cysteine and methionine metabolism * Synonym(s): == Reaction(...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/EX_spmd EX_spmd] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With iden...")
 
Line 1: Line 1:
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/EX_spmd EX_spmd] ==
−
* common_name:
+
* direction:
−
** Cysteine and methionine metabolism
+
** LEFT-TO-RIGHT
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
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== Reaction Formula ==
−
'''24''' reactions found over '''135''' reactions in the full pathway
+
* With identifiers:
−
* [[ADMDC]]
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** 1.0 [[spmd]][e] '''=>'''
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** 1 associated gene(s):
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* With common name(s):
−
*** [[B471_RS0100905]]
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** 1.0 Spermidine[e] '''=>'''
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** 3 reconstruction source(s) associated:
+
 
−
*** [[orthology-cljungdahlii]]
+
== Genes associated with this reaction  ==
−
*** [[orthology-bsubtilis]]
+
== Pathways  ==
−
*** [[orthology-aferrooxidans]]
+
== Reconstruction information  ==
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* [[AHCYSNS]]
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* Category: [[manual]]
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** 1 associated gene(s):
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** Source: [[manual-missing_rxn_creator]]
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*** [[B471_RS24265]]
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*** Comment: [[reaction from orthology templates not found by pantograph]]
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** 1 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
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−
* [[AHCi]]
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−
** 1 associated gene(s):
+
−
*** [[B471_RS0100885]]
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−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-aferrooxidans]]
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−
* [[AHSERL2]]
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−
** 1 associated gene(s):
+
−
*** [[B471_RS20990]]
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−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[ASAD]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0100620]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
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−
* [[ASP4DC]]
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−
** 0 associated gene:
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[manual-reaction_to_add_delete]]
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−
* [[ASPK]]
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−
** 2 associated gene(s):
+
−
*** [[B471_RS0100615]]
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−
*** [[B471_RS0107565]]
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−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[ASPO1]]
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−
** 1 associated gene(s):
+
−
*** [[B471_RS23075]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[ASPTA]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0109180]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[CYSDS]]
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−
** 1 associated gene(s):
+
−
*** [[B471_RS0115950]]
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−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
* [[CYSS]]
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−
** 3 associated gene(s):
+
−
*** [[B471_RS0106095]]
+
−
*** [[B471_RS0104440]]
+
−
*** [[B471_RS0108360]]
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−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[CYSTS]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0108360]]
+
−
*** [[B471_RS0104440]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[manual-reaction_to_add_delete]]
+
−
* [[HSDy]]
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−
** 1 associated gene(s):
+
−
*** [[B471_RS23515]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[HSERTA]]
+
−
** 2 associated gene(s):
+
−
*** [[B471_RS0108305]]
+
−
*** [[B471_RS20990]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[ILETA]]
+
−
** 4 associated gene(s):
+
−
*** [[B471_RS0110105]]
+
−
*** [[B471_RS0102340]]
+
−
*** [[B471_RS0106435]]
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−
*** [[B471_RS0109150]]
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−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[MDH]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0108660]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[METAT]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0117020]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[METS]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0109820]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
* [[MTAN]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS24265]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
* [[MTRI]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0112260]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[SERAT]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0118445]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
*** [[orthology-aferrooxidans]]
+
−
* [[SHSL2r]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS20990]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
* [[SPMS]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0113665]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-cljungdahlii]]
+
−
*** [[orthology-bsubtilis]]
+
−
* [[SPRMS]]
+
−
** 1 associated gene(s):
+
−
*** [[B471_RS0113665]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-bsubtilis]]
+
−
== Reaction(s) not found ==
+
−
* [http://bigg.ucsd.edu/universal/reactions/2AMACHYD 2AMACHYD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/2HBO 2HBO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/2OH3K5MPPISO 2OH3K5MPPISO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3SALATAi 3SALATAi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3SALATAim 3SALATAim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3SPYRSP 3SPYRSP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3SPYRSPh 3SPYRSPh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3SPYRSPm 3SPYRSPm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/3SPYRSPm_1 3SPYRSPm_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AATC AATC]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AATG AATG]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AATGm AATGm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACCAHh ACCAHh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACCAHm ACCAHm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACHMSSELCYSL ACHMSSELCYSL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACHMSSELCYSLh ACHMSSELCYSLh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACPCS ACPCS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSERL ACSERL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSERLh ACSERLh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSERLm ACSERLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSERSULL ACSERSULL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSERSULLh ACSERSULLh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ACSERSULLm ACSERSULLm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ADSHm ADSHm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AGTi AGTi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AGTim AGTim]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AGTix AGTix]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AHAL AHAL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AHHST AHHST]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AHSERL AHSERL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/AHSL AHSL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APAPTm APAPTm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/APCS APCS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ARAT ARAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ARD1 ARD1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ARD_1 ARD_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASADH ASADH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASAPT ASAPT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASPATh ASPATh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASPK_1 ASPK_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASPOm ASPOm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASPTAm ASPTAm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ASPTAp ASPTAp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BCTAh BCTAh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/BHMT BHMT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CTINBL CTINBL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYS CYS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSAT CYSAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSATm CYSATm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSDDS CYSDDS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSDO CYSDO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSLYSL CYSLYSL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSO CYSO]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSSADS CYSSADS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSS_1 CYSS_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSS_trdrd CYSS_trdrd]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSTA CYSTA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSTAm CYSTAm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/CYSTBL CYSTBL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DMT DMT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DNAMTn DNAMTn]
+
−
* [http://bigg.ucsd.edu/universal/reactions/DNAMTn2r DNAMTn2r]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GCL GCL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLUCYS GLUCYS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYTA GLYTA]
+
−
* [http://bigg.ucsd.edu/universal/reactions/GLYTA_1 GLYTA_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HCYSMT HCYSMT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HCYSMT2 HCYSMT2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HSDH HSDH]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HSDxi HSDxi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/HSST HSST]
+
−
* [http://bigg.ucsd.edu/universal/reactions/ILETAm ILETAm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LCYSTAT LCYSTAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LCYSTATm LCYSTATm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LDH_L LDH_L]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LDH_Lm LDH_Lm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/LLDHh LLDHh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MATm MATm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MCLORi MCLORi]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MCPST MCPST]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHf MDHf]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHh MDHh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHi2 MDHi2]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHm MDHm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MDHp MDHp]
+
−
* [http://bigg.ucsd.edu/universal/reactions/METB1 METB1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/METGL METGL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/METSOXR1 METSOXR1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/METS_1 METS_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/METSm METSm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MHPGLUT MHPGLUT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MS MS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MTAP MTAP]
+
−
* [http://bigg.ucsd.edu/universal/reactions/MTRK MTRK]
+
−
* [http://bigg.ucsd.edu/universal/reactions/RHCCE RHCCE]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SAT SAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SATm SATm]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SEAHCYSHYD SEAHCYSHYD]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SEAHCYSHYD_1 SEAHCYSHYD_1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SELCYSTGL SELCYSTGL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SELCYSTL SELCYSTL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SELCYSTLh SELCYSTLh]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SELCYSTS SELCYSTS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SELMETAT SELMETAT]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SERHL SERHL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SHSL1 SHSL1]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SHSL1h SHSL1h]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SHSL2h SHSL2h]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SLCYSS SLCYSS]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCHMSSELCYSL SUCHMSSELCYSL]
+
−
* [http://bigg.ucsd.edu/universal/reactions/SUCHMSSELCYSLh SUCHMSSELCYSLh]
+
 
== External links  ==
 
== External links  ==
−
{{#set: common_name=Cysteine and methionine metabolism}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: reaction found=24}}
+
{{#set: in pathway=}}
−
{{#set: total reaction=135}}
+
{{#set: reconstruction category=manual}}
−
{{#set: completion rate=18.0}}
+
{{#set: reconstruction source=manual-missing_rxn_creator}}
 +
{{#set: reconstruction comment=reaction from orthology templates not found by pantograph}}

Latest revision as of 16:37, 21 March 2018

Reaction EX_spmd

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Spermidine[e] =>

Genes associated with this reaction

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/cutigem/index.php?title=EX_spmd&oldid=7495"