Difference between revisions of "DUTPDP"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00960 map00960] == * common_name: ** Tropane, piperidine and pyridine alkaloid biosynthesis * Synon...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/DUTPDP DUTPDP] == * direction: ** LEFT-TO-RIGHT * common name: ** DUTP diphosphatase * Synonym(s):...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00960 map00960] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/DUTPDP DUTPDP] ==
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* common_name:
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* direction:
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** Tropane, piperidine and pyridine alkaloid biosynthesis
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** LEFT-TO-RIGHT
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* common name:
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** DUTP diphosphatase
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''4''' reactions found over '''27''' reactions in the full pathway
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* With identifiers:
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* [[ASPTA]]
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** 1.0 [[h2o]][c] '''+''' 1.0 [[dutp]][c] '''=>''' 1.0 [[ppi]][c] '''+''' 1.0 [[dump]][c] '''+''' 1.0 [[h]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[B471_RS0109180]]
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** 1.0 H2O H2O[c] '''+''' 1.0 DUTP C9H11N2O14P3[c] '''=>''' 1.0 Diphosphate[c] '''+''' 1.0 DUMP C9H11N2O8P[c] '''+''' 1.0 H+[c]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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== Genes associated with this reaction  ==
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*** [[orthology-bsubtilis]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-aferrooxidans]]
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* Gene: [[B471_RS0101570]]
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* [[HSTPT]]
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** Source: [[orthology-cljungdahlii]]
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** 2 associated gene(s):
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** Source: [[orthology-bsubtilis]]
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*** [[B471_RS0118315]]
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** Source: [[orthology-aferrooxidans]]
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*** [[B471_RS0116195]]
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== Pathways  ==
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** 1 reconstruction source(s) associated:
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* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
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*** [[orthology-cljungdahlii]]
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** '''68''' reactions found over '''244''' reactions in the full pathway
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* [[LYSDC]]
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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** 1 associated gene(s):
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** '''471''' reactions found over '''2349''' reactions in the full pathway
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*** [[B471_RS21410]]
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== Reconstruction information  ==
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** 2 reconstruction source(s) associated:
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* Category: [[orthology]]
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*** [[orthology-cljungdahlii]]
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** Source: [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** Tool: [[pantograph]]
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* [[PHETA1]]
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** Source: [[orthology-bsubtilis]]
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** 3 associated gene(s):
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*** Tool: [[pantograph]]
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*** [[B471_RS0109180]]
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** Source: [[orthology-aferrooxidans]]
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*** [[B471_RS23525]]
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*** Tool: [[pantograph]]
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*** [[B471_RS0118315]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-cljungdahlii]]
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*** [[orthology-bsubtilis]]
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*** [[orthology-aferrooxidans]]
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== Reaction(s) not found ==
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* [http://bigg.ucsd.edu/universal/reactions/1PPDCRc 1PPDCRc]
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* [http://bigg.ucsd.edu/universal/reactions/1PPDCRp 1PPDCRp]
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* [http://bigg.ucsd.edu/universal/reactions/3SALATAi 3SALATAi]
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* [http://bigg.ucsd.edu/universal/reactions/3SALATAim 3SALATAim]
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* [http://bigg.ucsd.edu/universal/reactions/AATC AATC]
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* [http://bigg.ucsd.edu/universal/reactions/AATG AATG]
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* [http://bigg.ucsd.edu/universal/reactions/AATGm AATGm]
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* [http://bigg.ucsd.edu/universal/reactions/AOOAh AOOAh]
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* [http://bigg.ucsd.edu/universal/reactions/AOXHEXCYCL AOXHEXCYCL]
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* [http://bigg.ucsd.edu/universal/reactions/ARAT ARAT]
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* [http://bigg.ucsd.edu/universal/reactions/ASPATh ASPATh]
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* [http://bigg.ucsd.edu/universal/reactions/ASPTAm ASPTAm]
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* [http://bigg.ucsd.edu/universal/reactions/ASPTAp ASPTAp]
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* [http://bigg.ucsd.edu/universal/reactions/COKECBESr COKECBESr]
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* [http://bigg.ucsd.edu/universal/reactions/ECGISOr ECGISOr]
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* [http://bigg.ucsd.edu/universal/reactions/EGMESTr EGMESTr]
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* [http://bigg.ucsd.edu/universal/reactions/HSPMS HSPMS]
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* [http://bigg.ucsd.edu/universal/reactions/LCYSTAT LCYSTAT]
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* [http://bigg.ucsd.edu/universal/reactions/LCYSTATm LCYSTATm]
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* [http://bigg.ucsd.edu/universal/reactions/LYSOXp LYSOXp]
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* [http://bigg.ucsd.edu/universal/reactions/PHETA1m PHETA1m]
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* [http://bigg.ucsd.edu/universal/reactions/POATh POATh]
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* [http://bigg.ucsd.edu/universal/reactions/PPD2CSPp PPD2CSPp]
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== External links  ==
 
== External links  ==
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{{#set: common_name=Tropane, piperidine and pyridine alkaloid biosynthesis}}
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* EC Number : 3.6.1.-
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{{#set: reaction found=4}}
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* BioCyc : META:DUTP-PYROP-RXN
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{{#set: total reaction=27}}
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* MetaNetX (MNX) Equation : MNXR97822
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{{#set: completion rate=15.0}}
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10248 10248]
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* Reactome : REACT_R-ATH-73666
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* KEGG Reaction : R02100
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=DUTP diphosphatase}}
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{{#set: gene associated=B471_RS0101570}}
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{{#set: in pathway=map00240|map01100}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-cljungdahlii|orthology-bsubtilis|orthology-aferrooxidans}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:38, 21 March 2018

Reaction DUTPDP

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • DUTP diphosphatase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H2O H2O[c] + 1.0 DUTP C9H11N2O14P3[c] => 1.0 Diphosphate[c] + 1.0 DUMP C9H11N2O8P[c] + 1.0 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 3.6.1.-
  • BioCyc : META:DUTP-PYROP-RXN
  • MetaNetX (MNX) Equation : MNXR97822
  • RHEA:
  • Reactome : REACT_R-ATH-73666
  • KEGG Reaction : R02100




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