|
|
Line 1: |
Line 1: |
− | [[Category:Pathway]] | + | [[Category:Reaction]] |
− | == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00564 map00564] == | + | == Reaction [http://bigg.ucsd.edu/universal/reactions/EX_ribflv EX_ribflv] == |
− | * common_name: | + | * direction: |
− | ** Glycerophospholipid metabolism | + | ** LEFT-TO-RIGHT |
| * Synonym(s): | | * Synonym(s): |
| | | |
− | == Reaction(s) found == | + | == Reaction Formula == |
− | '''36''' reactions found over '''134''' reactions in the full pathway
| + | * With identifiers: |
− | * [[AGPAT120]] | + | ** 1.0 [[ribflv]][e] '''=>''' |
− | ** 1 associated gene(s):
| + | * With common name(s): |
− | *** [[B471_RS0101020]]
| + | ** 1.0 Riboflavin C17H20N4O6[e] '''=>''' |
− | ** 1 reconstruction source(s) associated: | + | |
− | *** [[orthology-cljungdahlii]]
| + | == Genes associated with this reaction == |
− | * [[AGPAT140]]
| + | == Pathways == |
− | ** 1 associated gene(s):
| + | == Reconstruction information == |
− | *** [[B471_RS0101020]]
| + | * Category: [[manual]] |
− | ** 1 reconstruction source(s) associated:
| + | ** Source: [[manual-missing_rxn_creator]] |
− | *** [[orthology-cljungdahlii]]
| + | *** Comment: [[reaction from orthology templates not found by pantograph]] |
− | * [[AGPAT160]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0101020]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | * [[AGPAT161]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0101020]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | * [[AGPAT180]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0101020]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | * [[AGPAT181]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0101020]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | * [[DASYN120]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[DASYN140]]
| + | |
− | ** 0 associated gene: | + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[DASYN141]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated: | + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[DASYN160]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[DASYN161]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[DASYN180]] | + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[DASYN181]] | + | |
− | ** 0 associated gene: | + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[G3PCT]] | + | |
− | ** 0 associated gene: | + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[G3PD2]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0100985]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-aferrooxidans]]
| + | |
− | * [[GPDDA1]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS24705]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[GPDDA2]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS24705]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[GPDDA4]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS24705]]
| + | |
− | ** 2 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[PGPP120]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[PGPP160]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[PGPP161]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[PGPP180]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[PGPP181]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[PGSA120]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0110395]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | * [[PGSA160]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0110395]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | * [[PGSA161]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0110395]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | * [[PGSA180]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0110395]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | * [[PGSA181]]
| + | |
− | ** 1 associated gene(s):
| + | |
− | *** [[B471_RS0110395]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | * [[PSD160]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[PSD161]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[PSD180]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[PSD181]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[PSSA160]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[PSSA161]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[PSSA180]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[PSSA181]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | == Reaction(s) not found ==
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/2AGPEAT160 2AGPEAT160]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/2AGPEAT180 2AGPEAT180]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACHEe ACHEe]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AGPAT141 AGPAT141]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/AGPAT160h AGPAT160h]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CDAPPA120 CDAPPA120]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CDAPPA140 CDAPPA140]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CDAPPA141 CDAPPA141]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CDAPPA160 CDAPPA160]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CDAPPA161 CDAPPA161]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CDAPPA180 CDAPPA180]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CDAPPA181 CDAPPA181]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CDAPPA_HP CDAPPA_HP]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CHAT CHAT]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CHATn CHATn]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CHLP CHLP]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CHLPCTD CHLPCTD]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CHOLK CHOLK]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CPCTDTX CPCTDTX]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DAGK160 DAGK160]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DAGK160h DAGK160h]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DASYN_HP DASYN_HP]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/EPCTX EPCTX]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ETHAAL ETHAAL]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ETHAK ETHAK]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ETHP ETHP]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G3PAT120 G3PAT120]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G3PAT140 G3PAT140]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G3PAT141 G3PAT141]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G3PAT160 G3PAT160]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G3PAT160_1 G3PAT160_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G3PAT160h G3PAT160h]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G3PAT161 G3PAT161]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G3PAT180 G3PAT180]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G3PAT180h G3PAT180h]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G3PAT181 G3PAT181]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G3PAT181h G3PAT181h]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G3PD G3PD]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G3PD1 G3PD1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G3PD1ir G3PD1ir]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G3PD1irm G3PD1irm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G3PD2_1 G3PD2_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G3PD2m G3PD2m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G3PDm G3PDm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/G3PO G3PO]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GPDDA1pp GPDDA1pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GPDDA2pp GPDDA2pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GPDDA3 GPDDA3]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GPDDA3pp GPDDA3pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/GPDDA4pp GPDDA4pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LPLIPAL1A120pp LPLIPAL1A120pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LPLIPAL1A140pp LPLIPAL1A140pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LPLIPAL1A141pp LPLIPAL1A141pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LPLIPAL1A160pp LPLIPAL1A160pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LPLIPAL1A180pp LPLIPAL1A180pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LPLIPAL2A120 LPLIPAL2A120]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LPLIPAL2A140 LPLIPAL2A140]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LPLIPAL2A141 LPLIPAL2A141]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LPLIPAL2A160 LPLIPAL2A160]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LPLIPAL2A180 LPLIPAL2A180]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LPLIPAL2E160 LPLIPAL2E160]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/LPLIPAL2E180 LPLIPAL2E180]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PAPA160 PAPA160]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PAPA160h PAPA160h]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PAPA160pp PAPA160pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PEPT_EC PEPT_EC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PETHCT PETHCT]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PGPP120pp PGPP120pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PGPP160pp PGPP160pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PGPP161pp PGPP161pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PGPP180pp PGPP180pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PGPP181pp PGPP181pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PGPP_EC PGPP_EC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PGPP_HP PGPP_HP]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PGSA_HP PGSA_HP]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PLIPA1A120pp PLIPA1A120pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PLIPA1A140pp PLIPA1A140pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PLIPA1A141pp PLIPA1A141pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PLIPA1A160pp PLIPA1A160pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PLIPA1A180pp PLIPA1A180pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PLIPA1E160 PLIPA1E160]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PLIPA1E160pp PLIPA1E160pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PLIPA1E180 PLIPA1E180]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PLIPA1E180pp PLIPA1E180pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PLIPA2A120pp PLIPA2A120pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PLIPA2A140pp PLIPA2A140pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PLIPA2A141pp PLIPA2A141pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PLIPA2A160pp PLIPA2A160pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PLIPA2A180pp PLIPA2A180pp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PSD120 PSD120]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PSD_EC PSD_EC]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PSD_HP PSD_HP]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PSSA120 PSSA120]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PSSA_HP PSSA_HP]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SBPP1 SBPP1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SBPP1er SBPP1er]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SBPP3 SBPP3]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/SBPP3er SBPP3er]
| + | |
| == External links == | | == External links == |
− | {{#set: common_name=Glycerophospholipid metabolism}} | + | {{#set: direction=LEFT-TO-RIGHT}} |
− | {{#set: reaction found=36}} | + | {{#set: in pathway=}} |
− | {{#set: total reaction=134}} | + | {{#set: reconstruction category=manual}} |
− | {{#set: completion rate=27.0}} | + | {{#set: reconstruction source=manual-missing_rxn_creator}} |
| + | {{#set: reconstruction comment=reaction from orthology templates not found by pantograph}} |