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Line 1: |
Line 1: |
− | [[Category:Pathway]] | + | [[Category:Reaction]] |
− | == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00362 map00362] == | + | == Reaction [http://bigg.ucsd.edu/universal/reactions/CYSTS CYSTS] == |
− | * common_name: | + | * direction: |
− | ** Benzoate degradation | + | ** LEFT-TO-RIGHT |
| + | * common name: |
| + | ** Cystathionine beta synthase |
| * Synonym(s): | | * Synonym(s): |
| | | |
− | == Reaction(s) found == | + | == Reaction Formula == |
− | '''10''' reactions found over '''114''' reactions in the full pathway
| + | * With identifiers: |
− | * [[ACACT1r]] | + | ** 1.0 [[ser__L]][c] '''+''' 1.0 [[hcys__L]][c] '''=>''' 1.0 [[h2o]][c] '''+''' 1.0 [[cyst__L]][c] |
− | ** 1 associated gene(s):
| + | * With common name(s): |
− | *** [[B471_RS0105350]]
| + | ** 1.0 L-Serine[c] '''+''' 1.0 L-Homocysteine[c] '''=>''' 1.0 H2O H2O[c] '''+''' 1.0 L-Cystathionine[c] |
− | ** 1 reconstruction source(s) associated: | + | |
− | *** [[orthology-bsubtilis]]
| + | == Genes associated with this reaction == |
− | * [[ACACT2r]]
| + | Genes have been associated with this reaction based on different elements listed below. |
− | ** 2 associated gene(s):
| + | * Gene: [[B471_RS0108360]] |
− | *** [[B471_RS0110565]]
| + | ** Source: [[orthology-cljungdahlii]] |
− | *** [[B471_RS0115615]]
| + | * Gene: [[B471_RS0104440]] |
− | ** 1 reconstruction source(s) associated:
| + | ** Source: [[orthology-cljungdahlii]] |
− | *** [[orthology-bsubtilis]]
| + | == Pathways == |
− | * [[ACACT3r]]
| + | * [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100] |
− | ** 2 associated gene(s):
| + | ** '''471''' reactions found over '''2349''' reactions in the full pathway |
− | *** [[B471_RS0110565]]
| + | * [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130] |
− | *** [[B471_RS0115615]]
| + | ** '''148''' reactions found over '''694''' reactions in the full pathway |
− | ** 1 reconstruction source(s) associated:
| + | * [[map01230]]: [http://www.genome.jp/dbget-bin/www_bget?map01230 map01230] |
− | *** [[orthology-bsubtilis]]
| + | ** '''78''' reactions found over '''228''' reactions in the full pathway |
− | * [[ACACT4r]]
| + | * [[map00260]]: [http://www.genome.jp/dbget-bin/www_bget?map00260 map00260] |
− | ** 2 associated gene(s): | + | ** '''24''' reactions found over '''133''' reactions in the full pathway |
− | *** [[B471_RS0110565]]
| + | * [[map00270]]: [http://www.genome.jp/dbget-bin/www_bget?map00270 map00270] |
− | *** [[B471_RS0115615]]
| + | ** '''24''' reactions found over '''135''' reactions in the full pathway |
− | ** 1 reconstruction source(s) associated: | + | == Reconstruction information == |
− | *** [[orthology-bsubtilis]]
| + | * Category: [[orthology]] |
− | * [[ACACT7r]]
| + | ** Source: [[orthology-cljungdahlii]] |
− | ** 2 associated gene(s):
| + | *** Tool: [[pantograph]] |
− | *** [[B471_RS0115615]]
| + | * Category: [[manual]] |
− | *** [[B471_RS0110565]]
| + | ** Source: [[manual-reaction_to_add_delete]] |
− | ** 1 reconstruction source(s) associated:
| + | *** Comment: [[reaction added from literature evidence or biological expertise]] |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[ACALD]]
| + | |
− | ** 5 associated gene(s):
| + | |
− | *** [[B471_RS0100095]]
| + | |
− | *** [[B471_RS0110020]]
| + | |
− | *** [[B471_RS0119455]]
| + | |
− | *** [[B471_RS0113260]]
| + | |
− | *** [[B471_RS0115620]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-cljungdahlii]]
| + | |
− | * [[ECOAH1]]
| + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]] | + | |
− | * [[ECOAH9ir]]
| + | |
− | ** 2 associated gene(s):
| + | |
− | *** [[B471_RS0115580]]
| + | |
− | *** [[B471_RS0110785]] | + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | * [[HACD1]] | + | |
− | ** 0 associated gene:
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[manual-reaction_to_add_delete]]
| + | |
− | * [[MACCOAT]] | + | |
− | ** 2 associated gene(s): | + | |
− | *** [[B471_RS0115615]]
| + | |
− | *** [[B471_RS0110565]]
| + | |
− | ** 1 reconstruction source(s) associated:
| + | |
− | *** [[orthology-bsubtilis]]
| + | |
− | == Reaction(s) not found == | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/3HOPCD 3HOPCD] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/3MCAT23DOX 3MCAT23DOX]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/3OADPCOAT 3OADPCOAT]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/3OXCOAT 3OXCOAT]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/4CMLCL_kt 4CMLCL_kt]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/4HBHYOX 4HBHYOX] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/4HBZFm 4HBZFm] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/4MCAT23DOX 4MCAT23DOX]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/4OD2 4OD2] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/4OT2 4OT2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ACALDh ACALDh]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/BCOALIG BCOALIG]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/BCOALIG2 BCOALIG2] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/BZ12DOX BZ12DOX] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/BZDIOLDH BZDIOLDH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLm C2M26DCOAHLm] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLx C2M26DCOAHLx]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CAT23DOX CAT23DOX]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CATDOX CATDOX]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CHDCCH CHDCCH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/CMLDC CMLDC] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/DHACOAH DHACOAH] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECH_3hivcoa ECH_3hivcoa]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH11p ECOAH11p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH12 ECOAH12] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH12m ECOAH12m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH1_1 ECOAH1_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH1m ECOAH1m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH1x ECOAH1x] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/ECOAH9m ECOAH9m] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD10p HACD10p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD1_1 HACD1_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD1i HACD1i]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD1m HACD1m] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD1x HACD1x] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD2 HACD2] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD2_1 HACD2_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD2i HACD2i]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD2m HACD2m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD3 HACD3] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD3_1 HACD3_1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD3i HACD3i]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD3m HACD3m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD4 HACD4] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD4i HACD4i] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD4m HACD4m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD4p HACD4p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD5 HACD5]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD5i HACD5i] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD5m HACD5m] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD5p HACD5p] | + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD6 HACD6]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD6i HACD6i]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD6m HACD6m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD6p HACD6p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD7 HACD7]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD7i HACD7i]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD7m HACD7m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD7p HACD7p]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD9 HACD9]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACD9m HACD9m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HACDp HACDp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HADPCOADH3 HADPCOADH3]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp HBCO_nadp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp_m HBCO_nadp_m]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HIBDkt HIBDkt]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HMNO HMNO]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HMSD HMSD]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HMSD2 HMSD2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HMSH HMSH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HMSH2 HMSH2]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HOCCD HOCCD]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/HOPNTAL HOPNTAL]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/KATp KATp]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MUCCYCI MUCCYCI]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MUCCY_kt MUCCY_kt]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/MUCLI MUCLI]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/OCAALD OCAALD]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/OCHCCH OCHCCH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/OGCOAAT OGCOAAT]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/OMAHY OMAHY]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/OP4ENH OP4ENH]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/OXOAEL OXOAEL]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/PCADYOX PCADYOX]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLm T2M26DCOAHLm]
| + | |
− | * [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLx T2M26DCOAHLx]
| + | |
| == External links == | | == External links == |
− | {{#set: common_name=Benzoate degradation}} | + | * EC Number : 4.2.1.22 |
− | {{#set: reaction found=10}} | + | * BioCyc : META:CYSTATHIONINE-BETA-SYNTHASE-RXN |
− | {{#set: total reaction=114}} | + | * MetaNetX (MNX) Equation : MNXR97019 |
− | {{#set: completion rate=9.0}} | + | * RHEA: |
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10112 10112] |
| + | * Reactome : REACT_R-BTA-1614524 |
| + | * KEGG Reaction : R01290 |
| + | {{#set: direction=LEFT-TO-RIGHT}} |
| + | {{#set: common name=Cystathionine beta synthase}} |
| + | {{#set: gene associated=B471_RS0108360|B471_RS0104440}} |
| + | {{#set: in pathway=map01100|map01130|map01230|map00260|map00270}} |
| + | {{#set: reconstruction category=orthology|manual}} |
| + | {{#set: reconstruction source=orthology-cljungdahlii|manual-reaction_to_add_delete}} |
| + | {{#set: reconstruction tool=pantograph}} |
| + | {{#set: reconstruction comment=reaction added from literature evidence or biological expertise}} |
Genes have been associated with this reaction based on different elements listed below.