Difference between revisions of "PPDK"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00622 map00622] == * common_name: ** Xylene degradation * Synonym(s): == Reaction(s) found == '''...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PPDK PPDK] == * direction: ** LEFT-TO-RIGHT * common name: ** Pyruvate,phosphate dikinase. * Synony...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00622 map00622] ==
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== Reaction [http://bigg.ucsd.edu/universal/reactions/PPDK PPDK] ==
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* common_name:
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* direction:
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** Xylene degradation
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** LEFT-TO-RIGHT
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* common name:
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** Pyruvate,phosphate dikinase.
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''32''' reactions in the full pathway
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* With identifiers:
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* [[ACALD]]
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** 1.0 [[pyr]][c] '''+''' 1.0 [[atp]][c] '''+''' 1.0 [[pi]][c] '''=>''' 1.0 [[ppi]][c] '''+''' 1.0 [[amp]][c] '''+''' 1.0 [[h]][c] '''+''' 1.0 [[pep]][c]
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** 5 associated gene(s):
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* With common name(s):
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*** [[B471_RS0100095]]
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** 1.0 Pyruvate[c] '''+''' 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 Phosphate[c] '''=>''' 1.0 Diphosphate[c] '''+''' 1.0 AMP C10H12N5O7P[c] '''+''' 1.0 H+[c] '''+''' 1.0 Phosphoenolpyruvate[c]
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*** [[B471_RS0110020]]
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*** [[B471_RS0119455]]
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== Genes associated with this reaction  ==
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*** [[B471_RS0113260]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[B471_RS0115620]]
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* Gene: [[B471_RS0118720]]
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** 1 reconstruction source(s) associated:
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** Source: [[orthology-cljungdahlii]]
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*** [[orthology-cljungdahlii]]
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== Pathways  ==
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== Reaction(s) not found ==
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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* [http://bigg.ucsd.edu/universal/reactions/3MBZALDH 3MBZALDH]
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** '''471''' reactions found over '''2349''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/3MCAT23DOX 3MCAT23DOX]
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* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
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* [http://bigg.ucsd.edu/universal/reactions/4MBZALDH 4MBZALDH]
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** '''51''' reactions found over '''220''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/4MCAT23DOX 4MCAT23DOX]
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* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
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* [http://bigg.ucsd.edu/universal/reactions/4OD2 4OD2]
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** '''101''' reactions found over '''715''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/4OT2 4OT2]
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* [[map00720]]: [http://www.genome.jp/dbget-bin/www_bget?map00720 map00720]
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* [http://bigg.ucsd.edu/universal/reactions/ACALDh ACALDh]
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** '''25''' reactions found over '''157''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/ALCD25xi ALCD25xi]
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* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
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* [http://bigg.ucsd.edu/universal/reactions/ALCD25xim ALCD25xim]
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** '''18''' reactions found over '''71''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/BNORh BNORh]
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* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
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* [http://bigg.ucsd.edu/universal/reactions/BTCOARx BTCOARx]
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** '''22''' reactions found over '''163''' reactions in the full pathway
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* [http://bigg.ucsd.edu/universal/reactions/BZALDH BZALDH]
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== Reconstruction information  ==
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* [http://bigg.ucsd.edu/universal/reactions/BZDH BZDH]
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* Category: [[orthology]]
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* [http://bigg.ucsd.edu/universal/reactions/CAT23DOX CAT23DOX]
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** Source: [[orthology-cljungdahlii]]
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* [http://bigg.ucsd.edu/universal/reactions/DH3MCHCDH DH3MCHCDH]
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*** Tool: [[pantograph]]
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* [http://bigg.ucsd.edu/universal/reactions/DH4MCHCDH DH4MCHCDH]
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* [http://bigg.ucsd.edu/universal/reactions/HMSD HMSD]
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* [http://bigg.ucsd.edu/universal/reactions/HMSD2 HMSD2]
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* [http://bigg.ucsd.edu/universal/reactions/HMSH HMSH]
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* [http://bigg.ucsd.edu/universal/reactions/HMSH2 HMSH2]
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* [http://bigg.ucsd.edu/universal/reactions/HMSH3 HMSH3]
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* [http://bigg.ucsd.edu/universal/reactions/HOPNTAL HOPNTAL]
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* [http://bigg.ucsd.edu/universal/reactions/HOPNTAL2 HOPNTAL2]
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* [http://bigg.ucsd.edu/universal/reactions/MMSAD2 MMSAD2]
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* [http://bigg.ucsd.edu/universal/reactions/MTOLDOX MTOLDOX]
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* [http://bigg.ucsd.edu/universal/reactions/MXMO MXMO]
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* [http://bigg.ucsd.edu/universal/reactions/OMAHY OMAHY]
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* [http://bigg.ucsd.edu/universal/reactions/OP4ENH OP4ENH]
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* [http://bigg.ucsd.edu/universal/reactions/OP4ENH2 OP4ENH2]
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* [http://bigg.ucsd.edu/universal/reactions/PTOLDOX PTOLDOX]
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* [http://bigg.ucsd.edu/universal/reactions/PXMO PXMO]
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== External links  ==
 
== External links  ==
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{{#set: common_name=Xylene degradation}}
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* RHEA:
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{{#set: reaction found=1}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10756 10756]
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{{#set: total reaction=32}}
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* EC Number : 2.7.9.1
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{{#set: completion rate=3.0}}
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* MetaNetX (MNX) Equation : MNXR103107
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* KEGG Reaction : R00206
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* BioCyc : META:PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Pyruvate,phosphate dikinase.}}
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{{#set: gene associated=B471_RS0118720}}
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{{#set: in pathway=map01100|map01200|map01120|map00720|map00710|map00620}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-cljungdahlii}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 16:38, 21 March 2018

Reaction PPDK

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Pyruvate,phosphate dikinase.
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Pyruvate[c] + 1.0 ATP C10H12N5O13P3[c] + 1.0 Phosphate[c] => 1.0 Diphosphate[c] + 1.0 AMP C10H12N5O7P[c] + 1.0 H+[c] + 1.0 Phosphoenolpyruvate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • RHEA:
  • EC Number : 2.7.9.1
  • MetaNetX (MNX) Equation : MNXR103107
  • KEGG Reaction : R00206
  • BioCyc : META:PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN




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