Difference between revisions of "FBA3"

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(Created page with "Category:Pathway == Pathway [http://www.genome.jp/dbget-bin/www_bget?map00720 map00720] == * common_name: ** Carbon fixation pathways in prokaryotes * Synonym(s): == Reac...")
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/FBA3 FBA3] == * direction: ** REVERSIBLE * common name: ** Sedoheptulose 1,7-bisphosphate D-glycera...")
 
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[[Category:Pathway]]
+
[[Category:Reaction]]
== Pathway [http://www.genome.jp/dbget-bin/www_bget?map00720 map00720] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/FBA3 FBA3] ==
* common_name:
+
* direction:
** Carbon fixation pathways in prokaryotes
+
** REVERSIBLE
 +
* common name:
 +
** Sedoheptulose 1,7-bisphosphate D-glyceraldehyde-3-phosphate-lyase
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction(s) found ==
+
== Reaction Formula ==
'''25''' reactions found over '''157''' reactions in the full pathway
+
* With identifiers:
* [[ACACT1r]]
+
** 1.0 [[s17bp]][c] '''<=>''' 1.0 [[e4p]][c] '''+''' 1.0 [[dhap]][c]
** 1 associated gene(s):
+
* With common name(s):
*** [[B471_RS0105350]]
+
** 1.0 Sedoheptulose 1,7-bisphosphate[c] '''<=>''' 1.0 D-Erythrose 4-phosphate[c] '''+''' 1.0 Dihydroxyacetone phosphate[c]
** 1 reconstruction source(s) associated:
+
 
*** [[orthology-bsubtilis]]
+
== Genes associated with this reaction  ==
* [[ACACT2r]]
+
== Pathways  ==
** 2 associated gene(s):
+
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
*** [[B471_RS0110565]]
+
** '''471''' reactions found over '''2349''' reactions in the full pathway
*** [[B471_RS0115615]]
+
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
** 1 reconstruction source(s) associated:
+
** '''212''' reactions found over '''1054''' reactions in the full pathway
*** [[orthology-bsubtilis]]
+
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
* [[ACACT3r]]
+
** '''101''' reactions found over '''715''' reactions in the full pathway
** 2 associated gene(s):
+
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
*** [[B471_RS0110565]]
+
** '''51''' reactions found over '''220''' reactions in the full pathway
*** [[B471_RS0115615]]
+
* [[map00051]]: [http://www.genome.jp/dbget-bin/www_bget?map00051 map00051]
** 1 reconstruction source(s) associated:
+
** '''11''' reactions found over '''63''' reactions in the full pathway
*** [[orthology-bsubtilis]]
+
* [[map00710]]: [http://www.genome.jp/dbget-bin/www_bget?map00710 map00710]
* [[ACACT4r]]
+
** '''18''' reactions found over '''71''' reactions in the full pathway
** 2 associated gene(s):
+
* [[map00680]]: [http://www.genome.jp/dbget-bin/www_bget?map00680 map00680]
*** [[B471_RS0110565]]
+
** '''14''' reactions found over '''75''' reactions in the full pathway
*** [[B471_RS0115615]]
+
* [[map00010]]: [http://www.genome.jp/dbget-bin/www_bget?map00010 map00010]
** 1 reconstruction source(s) associated:
+
** '''20''' reactions found over '''149''' reactions in the full pathway
*** [[orthology-bsubtilis]]
+
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
* [[ACACT7r]]
+
** '''148''' reactions found over '''694''' reactions in the full pathway
** 2 associated gene(s):
+
* [[map00030]]: [http://www.genome.jp/dbget-bin/www_bget?map00030 map00030]
*** [[B471_RS0115615]]
+
** '''20''' reactions found over '''69''' reactions in the full pathway
*** [[B471_RS0110565]]
+
== Reconstruction information  ==
** 1 reconstruction source(s) associated:
+
* Category: [[manual]]
*** [[orthology-bsubtilis]]
+
** Source: [[manual-reaction_to_add_delete]]
* [[ACCOAC]]
+
*** Comment: [[reaction added from literature evidence or biological expertise]]
** 4 associated gene(s):
+
*** [[B471_RS0108400]]
+
*** [[B471_RS0108915]]
+
*** [[B471_RS0101860]]
+
*** [[B471_RS0108925]]
+
** 1 reconstruction source(s) associated:
+
*** [[orthology-aferrooxidans]]
+
* [[ACONT]]
+
** 1 associated gene(s):
+
*** [[B471_RS0105965]]
+
** 2 reconstruction source(s) associated:
+
*** [[orthology-cljungdahlii]]
+
*** [[orthology-bsubtilis]]
+
* [[ACONTa]]
+
** 1 associated gene(s):
+
*** [[B471_RS0105965]]
+
** 2 reconstruction source(s) associated:
+
*** [[orthology-cljungdahlii]]
+
*** [[orthology-aferrooxidans]]
+
* [[ACONTb]]
+
** 1 associated gene(s):
+
*** [[B471_RS0105965]]
+
** 2 reconstruction source(s) associated:
+
*** [[orthology-cljungdahlii]]
+
*** [[orthology-aferrooxidans]]
+
* [[ACS]]
+
** 3 associated gene(s):
+
*** [[B471_RS0108000]]
+
*** [[B471_RS0102585]]
+
*** [[B471_RS0101560]]
+
** 2 reconstruction source(s) associated:
+
*** [[orthology-bsubtilis]]
+
*** [[orthology-aferrooxidans]]
+
* [[ECOAH1]]
+
** 0 associated gene:
+
** 1 reconstruction source(s) associated:
+
*** [[manual-reaction_to_add_delete]]
+
* [[ECOAH9ir]]
+
** 2 associated gene(s):
+
*** [[B471_RS0115580]]
+
*** [[B471_RS0110785]]
+
** 1 reconstruction source(s) associated:
+
*** [[orthology-bsubtilis]]
+
* [[FTHFLi]]
+
** 1 associated gene(s):
+
*** [[B471_RS0106145]]
+
** 1 reconstruction source(s) associated:
+
*** [[orthology-cljungdahlii]]
+
* [[FUM]]
+
** 1 associated gene(s):
+
*** [[B471_RS0102435]]
+
** 1 reconstruction source(s) associated:
+
*** [[orthology-aferrooxidans]]
+
* [[HACD1]]
+
** 0 associated gene:
+
** 1 reconstruction source(s) associated:
+
*** [[manual-reaction_to_add_delete]]
+
* [[ICDHyr]]
+
** 0 associated gene:
+
** 1 reconstruction source(s) associated:
+
*** [[manual-reaction_to_add_delete]]
+
* [[MACCOAT]]
+
** 2 associated gene(s):
+
*** [[B471_RS0115615]]
+
*** [[B471_RS0110565]]
+
** 1 reconstruction source(s) associated:
+
*** [[orthology-bsubtilis]]
+
* [[MDH]]
+
** 1 associated gene(s):
+
*** [[B471_RS0108660]]
+
** 2 reconstruction source(s) associated:
+
*** [[orthology-bsubtilis]]
+
*** [[orthology-aferrooxidans]]
+
* [[MTHFC]]
+
** 1 associated gene(s):
+
*** [[B471_RS0101840]]
+
** 3 reconstruction source(s) associated:
+
*** [[orthology-cljungdahlii]]
+
*** [[orthology-bsubtilis]]
+
*** [[orthology-aferrooxidans]]
+
* [[MTHFD]]
+
** 1 associated gene(s):
+
*** [[B471_RS0101840]]
+
** 3 reconstruction source(s) associated:
+
*** [[orthology-cljungdahlii]]
+
*** [[orthology-bsubtilis]]
+
*** [[orthology-aferrooxidans]]
+
* [[MTHFR3]]
+
** 1 associated gene(s):
+
*** [[B471_RS21850]]
+
** 1 reconstruction source(s) associated:
+
*** [[orthology-bsubtilis]]
+
* [[PC]]
+
** 1 associated gene(s):
+
*** [[B471_RS0103275]]
+
** 2 reconstruction source(s) associated:
+
*** [[orthology-cljungdahlii]]
+
*** [[orthology-bsubtilis]]
+
* [[PPCOAC]]
+
** 2 associated gene(s):
+
*** [[B471_RS0108915]]
+
*** [[B471_RS0108400]]
+
** 1 reconstruction source(s) associated:
+
*** [[orthology-bsubtilis]]
+
* [[PPDK]]
+
** 1 associated gene(s):
+
*** [[B471_RS0118720]]
+
** 1 reconstruction source(s) associated:
+
*** [[orthology-cljungdahlii]]
+
* [[SUCOAS]]
+
** 2 associated gene(s):
+
*** [[B471_RS0108670]]
+
*** [[B471_RS0108675]]
+
** 2 reconstruction source(s) associated:
+
*** [[orthology-bsubtilis]]
+
*** [[orthology-aferrooxidans]]
+
== Reaction(s) not found ==
+
* [http://bigg.ucsd.edu/universal/reactions/3HOPCD 3HOPCD]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT10m ACACT10m]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT1m ACACT1m]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT1x ACACT1x]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT2 ACACT2]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT2m ACACT2m]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT3 ACACT3]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT3m ACACT3m]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT4m ACACT4m]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT4p ACACT4p]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT5m ACACT5m]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT5p ACACT5p]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT5r ACACT5r]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT6m ACACT6m]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT6p ACACT6p]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT6r ACACT6r]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT7m ACACT7m]
+
* [http://bigg.ucsd.edu/universal/reactions/ACACT7p ACACT7p]
+
* [http://bigg.ucsd.edu/universal/reactions/ACCOAC_1 ACCOAC_1]
+
* [http://bigg.ucsd.edu/universal/reactions/ACCOACrm ACCOACrm]
+
* [http://bigg.ucsd.edu/universal/reactions/ACCOAhi ACCOAhi]
+
* [http://bigg.ucsd.edu/universal/reactions/ACITL ACITL]
+
* [http://bigg.ucsd.edu/universal/reactions/ACKr ACKr]
+
* [http://bigg.ucsd.edu/universal/reactions/ACKrh ACKrh]
+
* [http://bigg.ucsd.edu/universal/reactions/ACKrm ACKrm]
+
* [http://bigg.ucsd.edu/universal/reactions/ACONTm ACONTm]
+
* [http://bigg.ucsd.edu/universal/reactions/ACONTx ACONTx]
+
* [http://bigg.ucsd.edu/universal/reactions/ACSm ACSm]
+
* [http://bigg.ucsd.edu/universal/reactions/ACSp ACSp]
+
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLm C2M26DCOAHLm]
+
* [http://bigg.ucsd.edu/universal/reactions/C2M26DCOAHLx C2M26DCOAHLx]
+
* [http://bigg.ucsd.edu/universal/reactions/CITMCOALm CITMCOALm]
+
* [http://bigg.ucsd.edu/universal/reactions/DHACOAH DHACOAH]
+
* [http://bigg.ucsd.edu/universal/reactions/ECH_3hivcoa ECH_3hivcoa]
+
* [http://bigg.ucsd.edu/universal/reactions/ECOAH11p ECOAH11p]
+
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12 ECOAH12]
+
* [http://bigg.ucsd.edu/universal/reactions/ECOAH12m ECOAH12m]
+
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1_1 ECOAH1_1]
+
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1m ECOAH1m]
+
* [http://bigg.ucsd.edu/universal/reactions/ECOAH1x ECOAH1x]
+
* [http://bigg.ucsd.edu/universal/reactions/ECOAH9m ECOAH9m]
+
* [http://bigg.ucsd.edu/universal/reactions/FRD FRD]
+
* [http://bigg.ucsd.edu/universal/reactions/FRDcm FRDcm]
+
* [http://bigg.ucsd.edu/universal/reactions/FRDm FRDm]
+
* [http://bigg.ucsd.edu/universal/reactions/FTHFLmi FTHFLmi]
+
* [http://bigg.ucsd.edu/universal/reactions/FUMm FUMm]
+
* [http://bigg.ucsd.edu/universal/reactions/GHBDHy GHBDHy]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD10p HACD10p]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD1_1 HACD1_1]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD1i HACD1i]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD1m HACD1m]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD1x HACD1x]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD2 HACD2]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD2_1 HACD2_1]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD2i HACD2i]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD2m HACD2m]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD3 HACD3]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD3_1 HACD3_1]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD3i HACD3i]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD3m HACD3m]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD4 HACD4]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD4i HACD4i]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD4m HACD4m]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD4p HACD4p]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD5 HACD5]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD5i HACD5i]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD5m HACD5m]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD5p HACD5p]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD6 HACD6]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD6i HACD6i]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD6m HACD6m]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD6p HACD6p]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD7 HACD7]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD7i HACD7i]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD7m HACD7m]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD7p HACD7p]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD9 HACD9]
+
* [http://bigg.ucsd.edu/universal/reactions/HACD9m HACD9m]
+
* [http://bigg.ucsd.edu/universal/reactions/HACDp HACDp]
+
* [http://bigg.ucsd.edu/universal/reactions/HADPCOADH3 HADPCOADH3]
+
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp HBCO_nadp]
+
* [http://bigg.ucsd.edu/universal/reactions/HBCO_nadp_m HBCO_nadp_m]
+
* [http://bigg.ucsd.edu/universal/reactions/HIBDkt HIBDkt]
+
* [http://bigg.ucsd.edu/universal/reactions/HMNO HMNO]
+
* [http://bigg.ucsd.edu/universal/reactions/ICDHhr ICDHhr]
+
* [http://bigg.ucsd.edu/universal/reactions/ICDHym ICDHym]
+
* [http://bigg.ucsd.edu/universal/reactions/ICDHyp ICDHyp]
+
* [http://bigg.ucsd.edu/universal/reactions/ITCOALm ITCOALm]
+
* [http://bigg.ucsd.edu/universal/reactions/KAT1 KAT1]
+
* [http://bigg.ucsd.edu/universal/reactions/MDHf MDHf]
+
* [http://bigg.ucsd.edu/universal/reactions/MDHh MDHh]
+
* [http://bigg.ucsd.edu/universal/reactions/MDHi2 MDHi2]
+
* [http://bigg.ucsd.edu/universal/reactions/MDHm MDHm]
+
* [http://bigg.ucsd.edu/universal/reactions/MDHp MDHp]
+
* [http://bigg.ucsd.edu/universal/reactions/MME MME]
+
* [http://bigg.ucsd.edu/universal/reactions/MMEm MMEm]
+
* [http://bigg.ucsd.edu/universal/reactions/MMM2 MMM2]
+
* [http://bigg.ucsd.edu/universal/reactions/MMMm MMMm]
+
* [http://bigg.ucsd.edu/universal/reactions/MSAR MSAR]
+
* [http://bigg.ucsd.edu/universal/reactions/MTHFC_1 MTHFC_1]
+
* [http://bigg.ucsd.edu/universal/reactions/MTHFCm MTHFCm]
+
* [http://bigg.ucsd.edu/universal/reactions/MTHFCm_1 MTHFCm_1]
+
* [http://bigg.ucsd.edu/universal/reactions/MTHFCx MTHFCx]
+
* [http://bigg.ucsd.edu/universal/reactions/MTHFD_1 MTHFD_1]
+
* [http://bigg.ucsd.edu/universal/reactions/MTHFDm MTHFDm]
+
* [http://bigg.ucsd.edu/universal/reactions/MTHFDm_1 MTHFDm_1]
+
* [http://bigg.ucsd.edu/universal/reactions/MTHFO MTHFO]
+
* [http://bigg.ucsd.edu/universal/reactions/MTHFO_nadp MTHFO_nadp]
+
* [http://bigg.ucsd.edu/universal/reactions/MTHFR2 MTHFR2]
+
* [http://bigg.ucsd.edu/universal/reactions/MTHFR2_1 MTHFR2_1]
+
* [http://bigg.ucsd.edu/universal/reactions/MTHFR3_1 MTHFR3_1]
+
* [http://bigg.ucsd.edu/universal/reactions/PCPPTh PCPPTh]
+
* [http://bigg.ucsd.edu/universal/reactions/PCPPTm PCPPTm]
+
* [http://bigg.ucsd.edu/universal/reactions/PCm PCm]
+
* [http://bigg.ucsd.edu/universal/reactions/PPC PPC]
+
* [http://bigg.ucsd.edu/universal/reactions/PPCOACm PPCOACm]
+
* [http://bigg.ucsd.edu/universal/reactions/PPDKh PPDKh]
+
* [http://bigg.ucsd.edu/universal/reactions/PPS PPS]
+
* [http://bigg.ucsd.edu/universal/reactions/PTA2 PTA2]
+
* [http://bigg.ucsd.edu/universal/reactions/PTAr PTAr]
+
* [http://bigg.ucsd.edu/universal/reactions/PTArh PTArh]
+
* [http://bigg.ucsd.edu/universal/reactions/PTArm PTArm]
+
* [http://bigg.ucsd.edu/universal/reactions/SSCOARy SSCOARy]
+
* [http://bigg.ucsd.edu/universal/reactions/SUCD1 SUCD1]
+
* [http://bigg.ucsd.edu/universal/reactions/SUCD1m SUCD1m]
+
* [http://bigg.ucsd.edu/universal/reactions/SUCD2_u6m SUCD2_u6m]
+
* [http://bigg.ucsd.edu/universal/reactions/SUCD3_u6m SUCD3_u6m]
+
* [http://bigg.ucsd.edu/universal/reactions/SUCDHh SUCDHh]
+
* [http://bigg.ucsd.edu/universal/reactions/SUCLm SUCLm]
+
* [http://bigg.ucsd.edu/universal/reactions/SUCOASm SUCOASm]
+
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLm T2M26DCOAHLm]
+
* [http://bigg.ucsd.edu/universal/reactions/T2M26DCOAHLx T2M26DCOAHLx]
+
 
== External links  ==
 
== External links  ==
{{#set: common_name=Carbon fixation pathways in prokaryotes}}
+
* RHEA:
{{#set: reaction found=25}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30167 30167]
{{#set: total reaction=157}}
+
* BioCyc : META:SEDOBISALDOL-RXN
{{#set: completion rate=16.0}}
+
* MetaNetX (MNX) Equation : MNXR99461
 +
* KEGG Reaction : R01829
 +
* EC Number : 4.1.2
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=Sedoheptulose 1,7-bisphosphate D-glyceraldehyde-3-phosphate-lyase}}
 +
{{#set: in pathway=map01100|map01110|map01120|map01200|map00051|map00710|map00680|map00010|map01130|map00030}}
 +
{{#set: reconstruction category=manual}}
 +
{{#set: reconstruction source=manual-reaction_to_add_delete}}
 +
{{#set: reconstruction comment=reaction added from literature evidence or biological expertise}}

Latest revision as of 16:38, 21 March 2018

Reaction FBA3

  • direction:
    • REVERSIBLE
  • common name:
    • Sedoheptulose 1,7-bisphosphate D-glyceraldehyde-3-phosphate-lyase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Sedoheptulose 1,7-bisphosphate[c] <=> 1.0 D-Erythrose 4-phosphate[c] + 1.0 Dihydroxyacetone phosphate[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

  • RHEA:
  • BioCyc : META:SEDOBISALDOL-RXN
  • MetaNetX (MNX) Equation : MNXR99461
  • KEGG Reaction : R01829
  • EC Number : 4.1.2